Browse Element(s) Details


Os.10686.1.S1_at

Description gb:AK107021.1
DB_XREF= gi:32992230
TID=Os.10686.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A01, full insert sequence.
FL= gb:AK107021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g417709/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41730Os.12814.2.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41730Os.12814.3.S1_x_at11/116+25012596..25018847ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os06g41740NANA6+25019460..25020425transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g41750OsAffx.15881.1.S1_at11/116+25024005..25033554TPR Domain containing protein, expressed
LOC_Os06g41760NANA6+25037385..25038575hypothetical protein
LOC_Os06g41770Os.10686.1.S1_at9/116+25040775..25043104bZIP transcription factor family protein, expressed
LOC_Os06g41780Os.47903.1.A1_at11/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41780OsAffx.11966.1.S1_x_at1/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41790Os.7462.1.S1_at11/116+25053772..25057838RNA recognition motif family protein, expressed
LOC_Os06g41800Os.55092.1.S1_at11/116+25065393..25070031Dihydroflavonol-4-reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0030968biological_processunfolded protein response
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10686.1.S1_at--513--1351Chr06:25042608..25042632 (25 bp)
AGAGATCTCGCGACGGTAACCGGAA
LOC_Os06g41770
Os.10686.1.S1_at--929--5531Chr06:25042662..25042686 (25 bp)
GAAACATTACTACTCCATGGGAGGC
LOC_Os06g41770
Os.10686.1.S1_at--24--6451Chr06:25042709..25042733 (25 bp)
GATCAAGCTAGATACCGGACCGTTC
LOC_Os06g41770
Os.10686.1.S1_at--159--8111Chr06:25042725..25042749 (25 bp)
GGACCGTTCCGTTTAGCAGCAGCTG
LOC_Os06g41770
Os.10686.1.S1_at--680--4111Chr06:25042763..25042787 (25 bp)
CGCTTCCTTGCAAAGTTGTTTCCAG
LOC_Os06g41770
Os.10686.1.S1_at--25--6851Chr06:25042780..25042804 (25 bp)
GTTTCCAGTCTGTATTGTAGCTAGC
LOC_Os06g41770
Os.10686.1.S1_at--1147--2231Chr06:25042810..25042834 (25 bp)
AAATTGGCGTGTCTATCGCCTGTCG
LOC_Os06g41770
Os.10686.1.S1_at--324--9171Chr06:25042838..25042862 (25 bp)
TGCCGCTTATCCATGGACTATCTTT
LOC_Os06g41770
Os.10686.1.S1_at--610--10711NONE
TTGCTGGCTTCTCATCATGTCGGAA
NONE
Os.10686.1.S1_at--577--171NONE
ATTTACAGTTGCTCCTATACTCCTA
NONE
Os.10686.1.S1_at--413--6691Chr06:25043057..25043081 (25 bp)
GTTCCTCAGCAGTATTTGCCTTGAT
LOC_Os06g41770
Target Sequence 
AGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGGAGGCG
TTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTT
CCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTAT
CCATGGACTATCTTTTTCNTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAG
GTAGTTTTGAAATCTGGNTTTGTTGAGTTGTTTGCTGGCTTCTCATCATGTCGGAANATTTACAGTTGCTCCTATACTCC
TACTTGCCAGGCTCTCNTGGNAAGTGTATGGCAGTAAAAAACAGGTATATTGTTCCTCAGCAGTATTTGCCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis