Browse Element(s) Details


Os.10691.1.S1_at

Description gb:AK103075.1
DB_XREF= gi:32988284
TID=Os.10691.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118C16, full insert sequence.
FL= gb:AK065771.1 gb:AK103075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0650010/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500Os.10691.1.S1_at10/115+3323165..3325263universal stress protein family protein, expressed
LOC_Os05g06510Os.37384.1.S1_s_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.19268.1.S1_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.37384.1.S1_x_at10/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06520NANA5+3333562..3333816Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g06530Os.24178.1.A1_at10/115+3339204..3342505expressed protein
LOC_Os05g06530Os.24178.1.A1_x_at9/115+3339204..3342505expressed protein
LOC_Os05g06530Os.11641.1.S1_at7/115+3339204..3342505expressed protein
LOC_Os05g06540Os.24080.1.A1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06540Os.38041.1.S1_at1/115+3347106..3351035hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10691.1.S1_at--919--3751Chr05:3323788..3323812 (25 bp)
CTCTCGGATTTCTCTGAACCTACAA
LOC_Os05g06500
Os.10691.1.S1_at--359--6351Chr05:3323737..3323761 (25 bp)
GATGCCGAAACATTGGACATGCTTA
LOC_Os05g06500
Os.10691.1.S1_at--51--5671Chr05:3323722..3323746 (25 bp)
GACATGCTTAATACTGTGGCCAGGC
LOC_Os05g06500
Os.10691.1.S1_at--112--6031Chr05:3323579..3323603 (25 bp)
GAGATCCCCGTGAGAAGCTATGCCA
LOC_Os05g06500
Os.10691.1.S1_at--942--5391Chr05:3323566..3323590 (25 bp)
GAAGCTATGCCAAGCCATCAACGAA
LOC_Os05g06500
Os.10691.1.S1_at--1054--5571Chr05:3323544..3323568 (25 bp)
GAAATCCCCATGAGCTGCTTGGTTA
LOC_Os05g06500
Os.10691.1.S1_at--1118--2051Chr05:3323349..3323373 (25 bp)
ACTTGCCCAGTCACAGTTGTCAAGA
LOC_Os05g06500
Os.10691.1.S1_at--29--5552Chr01:14757919..14758382 (25 bp)
GAAACATATTGAACCACCATGCAGT
NONE
Os.10691.1.S1_at--373--1391Chr05:3323195..3323219 (25 bp)
AGACGCTCAGTTGTACTTTGTGCTT
LOC_Os05g06500
Os.10691.1.S1_at--532--9031Chr05:3323171..3323195 (25 bp)
TGCACTCTCTGAGCCTGACTATGAA
LOC_Os05g06500
Os.10691.1.S1_at--131--5711Chr05:3323155..3323179 (25 bp)
GACTATGAAATGGATCCTGCTGTTT
NONE
Target Sequence 
CTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATAC
TGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCA
ACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGC
GACTANGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGNTGATCCTATTGTCANAAATATCC
ATNNNNGTGTTATATAGTCTGCTTAAATCTTTGTNCANCTATNTGAAACATATTGAACCACCATGCAGTGTAATTGTAAT
AATAAACNAAGTCANCTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCT
GTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis