Browse Element(s) Details


Os.10693.2.S1_at

Description gb:AK062746.1
DB_XREF= gi:32972764
TID=Os.10693.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F08, full insert sequence.
FL= gb:AK062746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0798011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07970OsAffx.2544.1.S1_at10/112+4181865..4182335hypothetical protein
LOC_Os02g07980Os.10693.2.S1_at11/112+4184164..4185808expressed protein
LOC_Os02g07990OsAffx.11933.1.S1_at11/112+4186144..4186455hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_x_at11/112+4190114..4190497hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_at8/112+4190114..4190497hypothetical protein
LOC_Os02g08010OsAffx.24158.1.S1_at11/112+4196023..4208367Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10693.2.S1_at--688--7851Chr02:4184621..4184645 (25 bp)
GGTATTGTGATGTTCATCCCTGGGT
LOC_Os02g07980
Os.10693.2.S1_at--364--551Chr02:4184606..4184630 (25 bp)
ATCCCTGGGTTCTACTACACAAGAA
LOC_Os02g07980
Os.10693.2.S1_at--1016--3151Chr02:4184583..4184607 (25 bp)
AATTGCCTACTATGCTTACAAAGGG
LOC_Os02g07980
Os.10693.2.S1_at--309--2231Chr02:4184557..4184581 (25 bp)
ACAAGGGCTTCTCGTTTTCGAACAT
LOC_Os02g07980
Os.10693.2.S1_at--436--5491Chr02:4184538..4184562 (25 bp)
GAACATCCCGCCGATCTAAAGAAAG
LOC_Os02g07980
Os.10693.2.S1_at--363--1051Chr02:4184513..4184537 (25 bp)
AGGTGTATCATACGCCGACTTGGTT
LOC_Os02g07980
Os.10693.2.S1_at--961--8571Chr02:4184493..4184517 (25 bp)
TGGTTCATCTCATCACGTCCAATGG
LOC_Os02g07980
Os.10693.2.S1_at--570--8471Chr02:4184471..4184495 (25 bp)
TGGCGAACACCATTTCTCATTTTCA
LOC_Os02g07980
Os.10693.2.S1_at--201--6631Chr02:4184317..4184341 (25 bp)
GTTGGGTTACTATGACACATGTCTG
LOC_Os02g07980
Os.10693.2.S1_at--940--6671Chr02:4184271..4184295 (25 bp)
GTTGCTCTCATGCTGTCTGCTGTTT
LOC_Os02g07980
Os.10693.2.S1_at--914--651Chr02:4184215..4184239 (25 bp)
ATGACAGTTTGGTCCCCTTATCAGA
LOC_Os02g07980
Target Sequence 
GGTATTGTGATGTTCATCCCTGGGTTCTACTACACAAGAATTGCCTACTATGCTTACAAAGGGTACAAGGGCTTCTCGTT
TTCGAACATCCCGCCGATCTAAAGAAAGAGGTGTATCATACGCCGACTTGGTTCATCTCATCACGTCCAATGGCGAACAC
CATTTCTCATTTTCATCTTGTCTATTTCTTCTTCTGCTGCCCCCCTTTGTAGGATGAACTTCTAGACATGTACATATAAA
ATGCTACTCCCATAATGTATCATTATGGTGTGGTGAGCTGAAAGGTTGTCCATTGTGTGATTATGTTGGGTTACTATGAC
ACATGTCTGATAAGAACTTTATGATGNTGTGTTGCTCTCATGCTGTCTGCTGTTTGTGTTAAGATNACTGAAGTTACCGN
ACTGTCATGACAGTTTGGTCCCCTTATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10693.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis