Browse Element(s) Details


Os.38295.1.S1_at

Description gb:AK070086.1
DB_XREF= gi:32980110
TID=Os.38295.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040E15, full insert sequence.
FL= gb:AK070816.1 gb:AK070086.1 gb:AK063386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0796010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07970OsAffx.2544.1.S1_at10/112+4181865..4182335hypothetical protein
LOC_Os02g07980Os.10693.2.S1_at11/112+4184164..4185808expressed protein
LOC_Os02g07990OsAffx.11933.1.S1_at11/112+4186144..4186455hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_x_at11/112+4190114..4190497hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_at8/112+4190114..4190497hypothetical protein
LOC_Os02g08010OsAffx.24158.1.S1_at11/112+4196023..4208367Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38295.1.S1_at--934--1351Chr02:4171208..4171232 (25 bp)
AGAAATTTTTGCTTCTACACCTCCG
LOC_Os02g07960
Os.38295.1.S1_at--1130--7031Chr02:4171072..4171096 (25 bp)
GTAAATCCCATTGTTAAGCCAGAGA
LOC_Os02g07960
Os.38295.1.S1_at--681--6071Chr02:4171044..4171068 (25 bp)
GAGTTAGTACTCCACCTAGGACAGG
LOC_Os02g07960
Os.38295.1.S1_at--864--951Chr02:4171027..4171051 (25 bp)
AGGACAGGTCCCTCGACATCTGCAA
LOC_Os02g07960
Os.38295.1.S1_at--366--2491Chr02:4171004..4171028 (25 bp)
AACATCCTTTTCTGTTGCATCACTT
LOC_Os02g07960
Os.38295.1.S1_at--447--251Chr02:4170917..4170941 (25 bp)
ATATCTGGCAGAACTTCCTGAAGGC
LOC_Os02g07960
Os.38295.1.S1_at--877--4271Chr02:4170818..4170925 (25 bp)
CCTGAAGGCAGGTTCTTGGAAGTTA
LOC_Os02g07960
Os.38295.1.S1_at--930--2591Chr02:4170782..4170806 (25 bp)
AACGCCAATGATAGAATACCGGTAG
LOC_Os02g07960
Os.38295.1.S1_at--962--6891Chr02:4170731..4170755 (25 bp)
GTATCAGATATTAGGCATCCCAACA
LOC_Os02g07960
Os.38295.1.S1_at--877--6231Chr02:4170599..4170623 (25 bp)
GATGGTGCACTATCATGGAATGCTC
LOC_Os02g07960
Os.38295.1.S1_at--452--3611NONE
CTTGGTGCAGCAAAGGCCTTAGACT
NONE
Target Sequence 
AGAAATTTTTGCTTCTACACCTCCGCCGCCGCCGCCTCCACCACCACCACCTCCTCCTCCTCCTCCGACACCACCACCGC
CACCGCCGCGGCCGCCGCCGCCGCCGCCACCACCACCACCTGTTGAAAAAGTGATTGTAAATCCCATTGTTAAGCCAGAG
AAAAGAGTTAGTACTCCACCTAGGACAGGTCCCTCGACATCTGCAACATCCTTTTCTGTTGCATCACTTCAGCAATATAC
AAATAGTTTTGAAGAGGGAAATTTGATAAGAGAGAGTAGGTTGGGAAAAGTATATCTGGCAGAACTTCCTGAAGGCAGGT
TCTTGGAAGTTATGAAGATTGATAACGCCAATGATAGAATACCGGTAGATGAATTTCTAGAACTGGTTGCAAGTGTATCA
GATATTAGGCATCCCAACATCCTCGAGCTTGTTGGATACTGTGCAGAATATGGTCAGAGGTTACTTGTTTATAATCATTT
CAGTAGAAAAACACTGCATGATGTACTACATGAAGGGGAGGAATTGGATGGTGCACTATCATGGAATGCTCGCCTCCAAG
TTGCTCTTGGTGCAGCAAAGGCCTTAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis