Browse Element(s) Details


OsAffx.2544.1.S1_at

Description tigr:9630.m00753
TID=OsAffx.2544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0797010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07970OsAffx.2544.1.S1_at10/112+4181865..4182335hypothetical protein
LOC_Os02g07980Os.10693.2.S1_at11/112+4184164..4185808expressed protein
LOC_Os02g07990OsAffx.11933.1.S1_at11/112+4186144..4186455hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_x_at11/112+4190114..4190497hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_at8/112+4190114..4190497hypothetical protein
LOC_Os02g08010OsAffx.24158.1.S1_at11/112+4196023..4208367Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2544.1.S1_at--340--7751Chr02:4182276..4182300 (25 bp)
GGTGTACACCGCCGTCATGGACCAC
LOC_Os02g07970
OsAffx.2544.1.S1_at--75--8411NONE
GGCCCGCGCTCGCTGGGAGGCCAAG
NONE
OsAffx.2544.1.S1_at--633--4691Chr02:4182064..4182088 (25 bp)
GCGGCTACTGTTGCGATGCGCCTAG
LOC_Os02g07970
OsAffx.2544.1.S1_at--529--4851Chr02:4182061..4182085 (25 bp)
GCTACTGTTGCGATGCGCCTAGCAG
LOC_Os02g07970
OsAffx.2544.1.S1_at--957--9911Chr02:4182059..4182083 (25 bp)
TACTGTTGCGATGCGCCTAGCAGTG
LOC_Os02g07970
OsAffx.2544.1.S1_at--646--10711Chr02:4182054..4182078 (25 bp)
TTGCGATGCGCCTAGCAGTGGCCCG
LOC_Os02g07970
OsAffx.2544.1.S1_at--578--1531Chr02:4182041..4182065 (25 bp)
AGCAGTGGCCCGCATCATCACGATG
LOC_Os02g07970
OsAffx.2544.1.S1_at--60--7551Chr02:4182037..4182061 (25 bp)
GTGGCCCGCATCATCACGATGCAGT
LOC_Os02g07970
OsAffx.2544.1.S1_at--14--4191Chr02:4182032..4182056 (25 bp)
CCGCATCATCACGATGCAGTCGTTA
LOC_Os02g07970
OsAffx.2544.1.S1_at--471--3551Chr02:4182029..4182053 (25 bp)
CATCATCACGATGCAGTCGTTAAGG
LOC_Os02g07970
OsAffx.2544.1.S1_at--702--371Chr02:4182025..4182049 (25 bp)
ATCACGATGCAGTCGTTAAGGAAGA
LOC_Os02g07970
Target Sequence 
GGTGTACACCGCCGTCATGGACCACGTCGTCGGCGAGGTCCACGGCGACCTCGTCGCCCAGGGCGTCGGCGACGGCGTTG
AGCTGGCCGGCGTCCTCGCGGCGGCCCGCGCTCGCTGGGAGGCCAAGCTGGCGCGGCGGCGCGGCGGCGCCGCCCTGGAT
GGCGACGGCGACGGCGACCGCGCGCCGCCGGAGTACAAGCCGGCGGCCGGCGGCGGCTACTGTTGCGATGCGCCTAGCAG
TGGCCCGCATCATCACGATGCAGTCGTTAAGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis