Browse Element(s) Details


Os.38295.1.S2_at

Description gb:CB670672
DB_XREF= gi:29674397
DB_XREF=OSJNEe03N22.r
CLONE=OSJNEe03N22
TID=Os.38295.1
CNT=24
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.38295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066M01, full insert sequence
FL= gb:AK070816.1 gb:AK070086.1 gb:AK063386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0796011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07970OsAffx.2544.1.S1_at10/112+4181865..4182335hypothetical protein
LOC_Os02g07980Os.10693.2.S1_at11/112+4184164..4185808expressed protein
LOC_Os02g07990OsAffx.11933.1.S1_at11/112+4186144..4186455hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_x_at11/112+4190114..4190497hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_at8/112+4190114..4190497hypothetical protein
LOC_Os02g08010OsAffx.24158.1.S1_at11/112+4196023..4208367Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38295.1.S2_at--859--4851Chr02:4168962..4168986 (25 bp)
GCTAGAACTTCTCACTGGCCGTAAA
LOC_Os02g07960
Os.38295.1.S2_at--1116--2631Chr02:4168817..4168963 (25 bp)
AACCATATGACAGTTCTCGTCCTCG
LOC_Os02g07960
Os.38295.1.S2_at--613--7251Chr02:4168799..4168823 (25 bp)
GTCCTCGTGCTGAACAACATCTTGT
LOC_Os02g07960
Os.38295.1.S2_at--258--6811Chr02:4168679..4168703 (25 bp)
GTTTTGCAGACATCATCAGCCGTTG
LOC_Os02g07960
Os.38295.1.S2_at--656--4491Chr02:4168121..4168145 (25 bp)
GCCGTACATCTAGGAAGCCAGCTCT
LOC_Os02g07960
Os.38295.1.S2_at--1098--7511Chr02:4168055..4168079 (25 bp)
GTGGAGCATCCTTTCAGTATTTATA
LOC_Os02g07960
Os.38295.1.S2_at--350--5651Chr02:4168027..4168051 (25 bp)
GACAGCATTGTCCTTTAGTGTACAT
LOC_Os02g07960
Os.38295.1.S2_at--691--7011Chr02:4168008..4168032 (25 bp)
GTACATGTTGATTCTGGAGCCGCAT
LOC_Os02g07960
Os.38295.1.S2_at--795--8531Chr02:4167994..4168018 (25 bp)
TGGAGCCGCATTTACCTGTTGAAAG
LOC_Os02g07960
Os.38295.1.S2_at--48--8171Chr02:4167949..4167973 (25 bp)
GGAACATGGGCCTTCTCATTATGGG
LOC_Os02g07960
Os.38295.1.S2_at--124--6951Chr02:4167920..4167944 (25 bp)
GTAGATTCCTGTACTTCCTAGACAT
LOC_Os02g07960
Target Sequence 
GCTAGAACTTCTCACTGGCCGTAAACCATATGACAGTTCTCGTCCTCGTGCTGAACAACATCTTGTTAGATGGGCTGATT
CTCAATTTCATGACATTGAGTCCATATCAAAGATGGTTGATCCTTCTATTCAAGGAGAGTGTTCTGAGAAAGTACTGTCA
CGTTTTGCAGACATCATCAGCCGTTGTATTCGGCCGGAACCAGAATTCAGACCATCAATGTCAGAGATTGTCCAAGACCT
AGCTAGGATTATAAGTGTTACCAGTGAGGAATCAGAGTAACGAAGAGATCAAGGTGGGGCCGTACATCTAGGAAGCCAGC
TCTCGCAGCTATCAAAAATATTCAGAGGAAACACAATCATTTCTGTGGAGCATCCTTTCAGTATTTATAATGGACAGCAT
TGTCCTTTAGTGTACATGTTGATTCTGGAGCCGCATTTACCTGTTGAAAGGTGGTAGTGGTACAGCCAGGGGAACATGGG
CCTTCTCATTATGGGCCAAGTAGATTCCTGTACTTCCTAGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38295.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis