Browse Element(s) Details


Os.10707.2.S1_at

Description gb:NM_195253.1
DB_XREF= gi:37531865
TID=Os.10707.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0009C07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0009C07.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1103410/11PAP/25A associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein
LOC_Os10g11034Os.10707.3.S1_x_at11/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_x_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.50043.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10675.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10707.2.S1_at--356--3811Chr10:5872144..5872584 (25 bp)
CTCCGGAATATTCAGTCTGTGTGCG
LOC_Os10g11034
Os.10707.2.S1_at--999--10211Chr10:5872572..5872592 (21 bp)
TATTCAGTCTGTGTGCGAAGGTGGC
LOC_Os10g11034
Os.10707.2.S1_at--423--10531Chr10:5872572..5872594 (23 bp)
TTCAGTCTGTGTGCGAAGGTGGCAT
LOC_Os10g11034
Os.10707.2.S1_at--383--7611Chr10:5872661..5872685 (25 bp)
GGGAATCCTCATGTGGTTGTGGCAT
LOC_Os10g11034
Os.10707.2.S1_at--372--571Chr10:5872665..5872689 (25 bp)
ATCCTCATGTGGTTGTGGCATGCAC
LOC_Os10g11034
Os.10707.2.S1_at--576--3751Chr10:5872668..5872692 (25 bp)
CTCATGTGGTTGTGGCATGCACAAG
LOC_Os10g11034
Os.10707.2.S1_at--37--5131Chr10:5872686..5872710 (25 bp)
GCACAAGGTGGTCACAAGTTGCATC
LOC_Os10g11034
Os.10707.2.S1_at--762--2891Chr10:5872690..5872714 (25 bp)
AAGGTGGTCACAAGTTGCATCAGCA
LOC_Os10g11034
Os.10707.2.S1_at--846--1231Chr10:5872702..5872726 (25 bp)
AGTTGCATCAGCAGATGAGGGAAGA
LOC_Os10g11034
Os.10707.2.S1_at--1133--2771Chr10:5872723..5872747 (25 bp)
AAGAGCAGGCAAGCTTGGCAGTGGC
LOC_Os10g11034
Os.10707.2.S1_at--813--4671NONE
GCGGTGGCAATGATGGGCATTAACT
NONE
Target Sequence 
CTCCGGAATATTCAGTCTGTGTGCGAAGGTGGCATAGGTAGGTGGCATGTGGTGGGGGGGTTCTTGAGGAAGCTGTCGCT
GCAGTCTGGGCAGGCAACAAGGGGAATCCTCATGTGGTTGTGGCATGCACAAGGTGGTCACAAGTTGCATCAGCAGATGA
GGGAAGAGCAGGCAAGCTTGGCAGTGGCGGTGGCAATGATGGGCATTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10707.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis