Browse Element(s) Details


Os.10707.3.S1_x_at

Description gb:AU075561
DB_XREF= gi:5455318
DB_XREF=AU075561
CLONE=C10759_8Z
TID=Os.10707.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.10707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0009C07.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1103411/11PAP/25A associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein
LOC_Os10g11034Os.10707.3.S1_x_at11/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_x_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.50043.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10675.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10707.3.S1_x_at--1105--671Chr10:5875786..5875810 (25 bp)
ATGACAGGCATCTCATTTGCATTGA
LOC_Os10g11034
Os.10707.3.S1_x_at--855--10731Chr10:5875807..5875831 (25 bp)
TTGAAGATCCTTTTGAGACCTCCCA
LOC_Os10g11034
Os.10707.3.S1_x_at--171--1751Chr10:5875824..5875848 (25 bp)
ACCTCCCATGATCTTGGTCGTGTTG
LOC_Os10g11034
Os.10707.3.S1_x_at--730--3091Chr10:5875854..5875878 (25 bp)
AATAGATCGATCTGGGCACTCCGAG
LOC_Os10g11034
Os.10707.3.S1_x_at--289--8051Chr10:5875898..5875922 (25 bp)
GGAGATATTGCACCTTGACCCAAAC
LOC_Os10g11034
Os.10707.3.S1_x_at--456--4351Chr10:5875924..5875948 (25 bp)
CCAGCATCACACTTTTTGAGCCTTA
LOC_Os10g11034
Os.10707.3.S1_x_at--190--431Chr10:5875983..5876007 (25 bp)
ATCATCATCATCATGTTCTGCTGTG
LOC_Os10g11034
Os.10707.3.S1_x_at--1025--10591Chr10:5875998..5876022 (25 bp)
TTCTGCTGTGTCAAGAAGCCCTTCA
LOC_Os10g11034
Os.10707.3.S1_x_at--415--2351Chr10:5876042..5876066 (25 bp)
AAAGCTTATGTCGTACTATGTGCAT
LOC_Os10g11034
Os.10707.3.S1_x_at--1031--7731Chr10:5876123..5876147 (25 bp)
GGTGGTGACAGCATGCTTCTGCTAA
LOC_Os10g11034
Os.10707.3.S1_x_at--1123--2171Chr10:5876232..5876256 (25 bp)
ACACTACTGTCCGATATTTCATGAT
LOC_Os10g11034
Target Sequence 
ATGACAGGCATCTCATTTGCATTGAAGATCCTTTTGAGACCTCCCATGATCTTGGTCGTGTTGTTGACAATAGATCGATC
TGGGCACTCCGAGAGGAATTTGAGCGAGCTNCGGAGATATTGCACCTTGACCCAAACCCCAGCATCACACTTTTTGAGCC
TTATGTGCCCTNTGAAGCTGAAACATGATACCACAAAATCATCATCATCATGTTCTGCTGTGTCAAGAAGCCCTTCAGTT
CCAAAGGAATCTTGTCAAAGCTTATGTCGTACTATGTGCATAGCTTAGCTGTACCATGTATACTTAAGTTGTAAAGTAAC
TAGGGGCCTCAGCAGTAGGTGGTGACAGCATGCTTCTGCTAAGTGGTAATTGGGGGAAGCCAGCAATATTTAATCAGATT
TCTAGTGCTATCAATTCTTATTTAGAAAGGGAGATGTTTGAACTAGACACTACTGTCCGATATTTCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10707.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis