Browse Element(s) Details


Os.10726.2.S1_x_at

Description gb:NM_185811.1
DB_XREF= gi:34898707
GEN=P0038C05.27
TID=Os.10726.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C72150(E1090),AU075649(E1090)~unknown protein (P0038C05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains ESTs C72150(E1090),AU075649(E1090)~unknown protein (P0038C05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1643011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed
LOC_Os06g16430Os.10726.2.S1_x_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.2.S1_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.1.S1_a_at9/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16440OsAffx.27667.1.S1_s_at11/116+9410292..9410756expressed protein
LOC_Os06g16440OsAffx.27667.2.S1_at11/116+9410292..9410756expressed protein
LOC_Os06g16450Os.54487.1.S1_at11/116+9417329..9422052Leucine Rich Repeat family protein, expressed
LOC_Os06g16460OsAffx.15459.1.S1_at11/116+9427383..9428032hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10726.2.S1_x_at--915--5311Chr06:9406416..9406440 (25 bp)
GAAGGGTATCTCCACAAACCAAGAA
LOC_Os06g16430
Os.10726.2.S1_x_at--186--111Chr06:9406458..9406482 (25 bp)
ATTCTCCATTCCAAAACCTCAGTGG
LOC_Os06g16430
Os.10726.2.S1_x_at--525--2371Chr06:9406471..9406495 (25 bp)
AAACCTCAGTGGCTTGGTGACAAGA
LOC_Os06g16430
Os.10726.2.S1_x_at--1049--10211Chr06:9406587..9406611 (25 bp)
TATTCTTTCAGGTTCCGCCAATGGA
LOC_Os06g16430
Os.10726.2.S1_x_at--641--2771Chr06:9406613..9406637 (25 bp)
AAGACCTTGAAGAAGCTGCTCCTGG
LOC_Os06g16430
Os.10726.2.S1_x_at--579--3831Chr06:9406628..9406652 (25 bp)
CTGCTCCTGGGCTTATTTTACGGAA
LOC_Os06g16430
Os.10726.2.S1_x_at--954--5251Chr06:9406699..9406723 (25 bp)
GAATCCGAAGCATCTGCTGCTGATG
LOC_Os06g16430
Os.10726.2.S1_x_at--107--8671Chr06:9406725..9406749 (25 bp)
TGTGGCCCTCTTGCTGAAGCACAAA
LOC_Os06g16430
Os.10726.2.S1_x_at--125--5271Chr06:9406740..9406764 (25 bp)
GAAGCACAAACGTGGTTTACAAACT
LOC_Os06g16430
Os.10726.2.S1_x_at--594--2191Chr06:9406827..9406851 (25 bp)
ACAAAAACGCGTACTGGGTCCAGCA
LOC_Os06g16430
Os.10726.2.S1_x_at--1138--2491Chr06:9406887..9406908 (22 bp)
AACATGGGTGCCACCTGAAGGTCAA
LOC_Os06g16430
Target Sequence 
GAAGGGTATCTCCACAAACCAAGAAAATGGCAGCAAACCTGCATTCTCCATTCCAAAACCTCAGTGGCTTGGTGACAAGA
GGACCGTGGAATCTGAAGAGAACTGTATAAAAGAAGAAAGTGCCAATGAAGAGGAGACTGATAATTTTGTGGACTACAAA
GATCGAAAAACTATTCTTTCAGGTTCCGCCAATGGAAAAGACCTTGAAGAAGCTGCTCCTGGGCTTATTTTACGGAAGAG
AAAGTCTGATCAATCAGCAGCCAATGAGGTGGAATCTTCAGTTGAATCCGAAGCATCTGCTGCTGATGCTGTGGCCCTCT
TGCTGAAGCACAAACGTGGTTTACAAACTTCTGAAGATATGGAGGATGAGAATGAACCACAAGCTAGCAAGAGAAAAAGT
AAAAAGTCGAAACAAAAACGCGTACTGGGTCCAGCAAGACCAGATTTTCTGGACGCAGGTCCAGATCATGAAACATGGGT
GCCACCTGAAGGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10726.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis