Browse Element(s) Details


Os.10787.1.S1_at

Description gb:AK065730.1
DB_XREF= gi:32975748
TID=Os.10787.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.10787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 17FPG011
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037C05, full insert sequence.
FL= gb:AB110189.1 gb:AK065730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5327011/11Stem-specific protein TSJT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein
LOC_Os03g53250Os.11644.1.S1_at11/113+30499239..30504143Protein kinase domain containing protein, expressed
LOC_Os03g53260NANA3+30508598..30509008hypothetical protein
LOC_Os03g53270Os.10787.1.S1_at11/113+30511207..30514093Stem-specific protein TSJT1, putative, expressed
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010044biological_processresponse to aluminum ion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10787.1.S1_at--955--8871Chr03:30511903..30511927 (25 bp)
TGATGGTAGCATTCCTTTCTTCTGG
LOC_Os03g53270
Os.10787.1.S1_at--1061--10751Chr03:30511874..30511898 (25 bp)
TTGACTCCGAGAACCACCTTGTGTT
LOC_Os03g53270
Os.10787.1.S1_at--925--6711Chr03:30511852..30511876 (25 bp)
GTTCTCTGACAATGTTGACCTTCTC
LOC_Os03g53270
Os.10787.1.S1_at--472--5031Chr03:30511514..30511538 (25 bp)
GCAGACTGGTCCAACCATTTCTGAG
LOC_Os03g53270
Os.10787.1.S1_at--1161--4911Chr03:30511469..30511493 (25 bp)
GCTTCCATTTTACCATTTCGGCATT
LOC_Os03g53270
Os.10787.1.S1_at--743--10591Chr03:30511453..30511477 (25 bp)
TTCGGCATTTCCAGTTGTGGACTCT
LOC_Os03g53270
Os.10787.1.S1_at--464--2011Chr03:30511433..30511457 (25 bp)
ACTCTGCCCTGTATGTCTGATGCTG
LOC_Os03g53270
Os.10787.1.S1_at--687--5791Chr03:30511382..30511406 (25 bp)
GACGCGCTAGGTTTTACTTTCAGGC
LOC_Os03g53270
Os.10787.1.S1_at--1047--851Chr03:30511361..30511385 (25 bp)
AGGCGTCCGTAAAACTCTTCTGCAA
LOC_Os03g53270
Os.10787.1.S1_at--128--1551Chr03:30511328..30511352 (25 bp)
AGCATTGCTATCTTTCTACGTCATA
LOC_Os03g53270
Os.10787.1.S1_at--627--1031Chr03:30511254..30511278 (25 bp)
AGGTCTATCTCTCGTGTTCTGATAA
LOC_Os03g53270
Target Sequence 
TGATGGTAGCATTCCTTTCTTCTGGGGCGTTGACTCCGAGAACCACCTTGTGTTCTCTGACAATGTTGACCTTCTCAAGG
CATCCTGCGGGAACTCGTTTGCGCCATTCCCCAAAGGCTGCTTCTACACCACCTCTGGAGGGCTGCAGAGCTTCGAGCAC
CCGCTGAACGAGCTGAAGCCTGTGCCGCGGGTCGACAGCCAGGGCCAGATGTGCGGCTCCAACTACAAGGTCGACAGCGA
GGCCAAGAAGGACTCCGGGATCCCTCGGGTCGGCAGCGCCGCAGACTGGTCCAACCATTTCTGAGGCAAAGATACCATTG
AGATGGCTTCCATTTTACCATTTCGGCATTTCCAGTTGTGGACTCTGCCCTGTATGTCTGATGCTGAAGTACTCAAGAAC
CACTCCTGAGACGACGCGCTAGGTTTTACTTTCAGGCGTCCGTAAAACTCTTCTGCAAACATTCAGAGCATTGCTATCTT
TCTACGTCATAGTACTGAATACTGATACTTATGTAATCTGATGATACCACGTTGTGGTTGAGGTCTATCTCTCGTGTTCT
GATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis