Browse Element(s) Details


Os.54949.1.S1_at

Description gb:AK107163.1
DB_XREF= gi:32992372
TID=Os.54949.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F05, full insert sequence.
FL= gb:AK107163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5324011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53200Os.34925.1.A1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_s_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53210Os.4846.1.S1_at1/113+30470198..30470838expressed protein
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein
LOC_Os03g53250Os.11644.1.S1_at11/113+30499239..30504143Protein kinase domain containing protein, expressed
LOC_Os03g53260NANA3+30508598..30509008hypothetical protein
LOC_Os03g53270Os.10787.1.S1_at11/113+30511207..30514093Stem-specific protein TSJT1, putative, expressed
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54949.1.S1_at--1000--852Chr01:23019188..23019212 (25 bp)
ATGGCATCGTGGATCTGGCCGGCAA
NONE
Os.54949.1.S1_at--797--2951Chr03:30495126..30495150 (25 bp)
AAGGCCTGCGACGATGTTGTGGATA
LOC_Os03g53240
Os.54949.1.S1_at--992--712Chr01:23019240..23019264 (25 bp)
ATGTTGTGGATAGGCCGTCGACGAT
NONE
Os.54949.1.S1_at--556--6252Chr01:23019262..23019286 (25 bp)
GATGTGGTGGATCGGCCGGCAACGT
NONE
Os.54949.1.S1_at--501--1071Chr03:30494993..30495017 (25 bp)
AGGGAGCTGCAGTCTAGATATTTTT
LOC_Os03g53240
Os.54949.1.S1_at--138--7151Chr03:30494982..30495006 (25 bp)
GTCTAGATATTTTTACTGGTAGTAC
LOC_Os03g53240
Os.54949.1.S1_at--5--7032Chr01:23019392..23019416 (25 bp)
GTACATAGTGTACGTGCTTGAGACT
NONE
Os.54949.1.S1_at--123--6992Chr01:23019401..23019425 (25 bp)
GTACGTGCTTGAGACTTTAGATAAT
NONE
Os.54949.1.S1_at--763--10471Chr03:30494928..30494952 (25 bp)
TTACAGTCAAGTGGCATTGTGCTCT
LOC_Os03g53240
Os.54949.1.S1_at--919--2871Chr03:30494920..30494944 (25 bp)
AAGTGGCATTGTGCTCTATATTGTG
LOC_Os03g53240
Os.54949.1.S1_at--988--7032Chr01:23019458..23019482 (25 bp)
GTAACCACAAGATTGAATTTCGCTG
NONE
Target Sequence 
ATGGCATCGTGGATCTGGCCGGCAACTCGAGGGAAAAAGAAGGCCTGCGACGATGTTGTGGATAGGCCGTCGACGATGTG
GTGGATCGGCCGGCAACGTTGAGGGAGAGGAATAAACGGAGAAAGTGAGGAGGGAGAGAGGCGGAGAAAGACGGGAAGAG
AGAGGAAAAAAGAGGGAGCTGCAGTCTAGATATTTTTACTGGTAGTACATAGTGTACGTGCTTGAGACTTTAGATAATTA
CAGTCAAGTGGCATTGTGCTCTATATTGTGGTAACCACAAGATTGAATTTCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis