Browse Element(s) Details


Os.12747.1.S1_at

Description gb:AK099593.1
DB_XREF= gi:32984802
TID=Os.12747.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043O08, full insert sequence.
FL= gb:AK099593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5323011/11Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53180OsAffx.3598.1.S1_x_at11/113+30457943..30458401hypothetical protein
LOC_Os03g53190Os.4749.1.S1_at11/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53190Os.40159.1.A1_x_at1/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53200Os.34925.1.A1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_s_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53210Os.4846.1.S1_at1/113+30470198..30470838expressed protein
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein
LOC_Os03g53250Os.11644.1.S1_at11/113+30499239..30504143Protein kinase domain containing protein, expressed
LOC_Os03g53260NANA3+30508598..30509008hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004781molecular_functionsulfate adenylyltransferase (ATP) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12747.1.S1_at--596--1531Chr03:30483293..30483317 (25 bp)
AGCATGGCTCCTGGGCTTGAGAAGC
LOC_Os03g53230
Os.12747.1.S1_at--132--5411Chr03:30483273..30483297 (25 bp)
GAAGCTCAATATCCTTCCTTTCAAG
LOC_Os03g53230
Os.12747.1.S1_at--947--10671Chr03:30483083..30483283 (25 bp)
TTCCTTTCAAGGTGGCTGCATATGA
LOC_Os03g53230
Os.12747.1.S1_at--41--8131Chr03:30483040..30483064 (25 bp)
GGACTTTTTCGATCCATCAAGGAAA
LOC_Os03g53230
Os.12747.1.S1_at--169--10671Chr03:30483010..30483033 (24 bp)
TTCCTGTTCATCTCTGGCACAAAGA
LOC_Os03g53230
Os.12747.1.S1_at--536--3291Chr03:30482892..30482913 (22 bp)
CAAAGATGCGTACTCTTGCCAAGAA
LOC_Os03g53230
Os.12747.1.S1_at--355--8191Chr03:30482826..30482850 (25 bp)
GGAAGGTCCTTGTTGAATACTACGA
LOC_Os03g53230
Os.12747.1.S1_at--156--9951Chr03:30482806..30482830 (25 bp)
TACGACAGCTTGACGCCATCAGCGG
LOC_Os03g53230
Os.12747.1.S1_at--418--3411Chr03:30482780..30482804 (25 bp)
CAGCAGCAAACTGCGCGAGGCGGTT
LOC_Os03g53230
Os.12747.1.S1_at--182--4691Chr03:30482761..30482785 (25 bp)
GCGGTTGCGGCCTAGAAAGCTGAAA
LOC_Os03g53230
Os.12747.1.S1_at--240--5871Chr03:30482529..30482553 (25 bp)
GAGCCTTTGTGTGCTCTGCTAGATA
LOC_Os03g53230
Target Sequence 
AGCATGGCTCCTGGGCTTGAGAAGCTCAATATCCTTCCTTTCAAGGTGGCTGCATATGACACAAAGCAAAAGAAAATGGA
CTTTTTCGATCCATCAAGGAAAGATGATTTCCTGTTCATCTCTGGCACAAAGATGCGTACTCTTGCCAAGAACNGCCAGA
GCCCCCCTGACGGATTCATGTGCCCGGGTGGCTGGAAGGTCCTTGTTGAATACTACGACAGCTTGACGCCATCAGCGGAC
AGCAGCAAACTGCGCGAGGCGGTTGCGGCCTAGAAAGCTGAAACTACCTCAAATAAGCAAGAACATTGCATCTTGCAACT
GTAAAATGGTTCTTTCAGAGAGAGAACCAATGGTATATGTGTATACTACTGGTCGCAAGGCCTAAACATTTGGGTTTGAT
TGGAAGCGCATTCTGGTGTGATTTGTATGTGCCCTATCATCTGGTAATGCTACATTGGAAGCTCATCATGNTNGTTGGTG
TTAATAAGGATGAGCCTTTGTGTGCTCTGCTAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis