Browse Element(s) Details


Os.40159.1.A1_x_at

Description gb:CF330294
DB_XREF= gi:33808818
DB_XREF=NACL--05-P06.b1
CLONE=NACL--05-P06
TID=Os.40159.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40159 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g531901/11Histone H2A.Z, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed
LOC_Os03g53180OsAffx.3598.1.S1_x_at11/113+30457943..30458401hypothetical protein
LOC_Os03g53190Os.4749.1.S1_at11/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53190Os.40159.1.A1_x_at1/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53200Os.34925.1.A1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_s_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53210Os.4846.1.S1_at1/113+30470198..30470838expressed protein
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40159.1.A1_x_at--29--10831Chr03:30466721..30466740 (20 bp)
TTGTGTGATGAGTCCTAGTTCCCGG
LOC_Os03g53190
Os.40159.1.A1_x_at--355--9871NONE
TTTAAAAATCAGCAACCCATTTGGG
NONE
Os.40159.1.A1_x_at--457--10471NONE
TTAAAAATCAGCAACCCATTTGGGT
NONE
Os.40159.1.A1_x_at--297--9831NONE
TAAAAATCAGCAACCCATTTGGGTA
NONE
Os.40159.1.A1_x_at--160--2271NONE
AAATCAGCAACCCATTTGGGTAATG
NONE
Os.40159.1.A1_x_at--273--371NONE
ATCAGCAACCCATTTGGGTAATGGT
NONE
Os.40159.1.A1_x_at--73--3411NONE
CAGCAACCCATTTGGGTAATGGTTT
NONE
Os.40159.1.A1_x_at--355--10211NONE
TTTGGGTAATGGTTTCCTTGGACTG
NONE
Os.40159.1.A1_x_at--1113--6831NONE
GTTTCCTTGGACTGGTTCAGTCATT
NONE
Os.40159.1.A1_x_at--517--10291NONE
TTTCCTTGGACTGGTTCAGTCATTG
NONE
Os.40159.1.A1_x_at--53--9251NONE
TCCTTGGACTGGTTCAGTCATTGGA
NONE
Target Sequence 
TTGTGTGATGAGTCCTAGTTCCCGGGTAGGTTTTAGTCAAGCTTTTTAAAAATCAGCAACCCATTTGGGTAATGGTTTCC
TTGGACTGGTTCAGTCATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40159.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis