Browse Element(s) Details


Os.4749.1.S1_at

Description gb:AK120299.1
DB_XREF= gi:37989922
TID=Os.4749.1
CNT=60
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052C06, full insert sequence.
FL= gb:AK120299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5319011/11Histone H2A.Z, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed
LOC_Os03g53180OsAffx.3598.1.S1_x_at11/113+30457943..30458401hypothetical protein
LOC_Os03g53190Os.4749.1.S1_at11/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53190Os.40159.1.A1_x_at1/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53200Os.34925.1.A1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_s_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53210Os.4846.1.S1_at1/113+30470198..30470838expressed protein
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4749.1.S1_at--984--9451Chr03:30466532..30466556 (25 bp)
TCTGAAGGTCAAGCGTATCACCCCT
LOC_Os03g53190
Os.4749.1.S1_at--1044--9511Chr03:30466601..30466625 (25 bp)
TCTCATCAAGGGTACCATCGCTGGT
LOC_Os03g53190
Os.4749.1.S1_at--829--7511Chr03:30466624..30466648 (25 bp)
GTGGAGGTGTCATTCCTCACATCCA
LOC_Os03g53190
Os.4749.1.S1_at--662--9771Chr03:30466790..30466814 (25 bp)
TAATGGTTTCCTCGTACTGCTTCAG
LOC_Os03g53190
Os.4749.1.S1_at--239--7011Chr03:30466803..30466827 (25 bp)
GTACTGCTTCAGTCATTGGAACACT
LOC_Os03g53190
Os.4749.1.S1_at--235--3611Chr03:30466879..30466903 (25 bp)
CTTGGTTCCCTTTGCTTAATTTGTG
LOC_Os03g53190
Os.4749.1.S1_at--178--6531Chr03:30466957..30466981 (25 bp)
GATTTCGTAGTACATGGCCTGCCTG
LOC_Os03g53190
Os.4749.1.S1_at--545--9171Chr03:30466976..30467000 (25 bp)
TGCCTGGTCTCTGCAGTTATGATGT
LOC_Os03g53190
Os.4749.1.S1_at--761--6271Chr03:30466996..30467020 (25 bp)
GATGTAGTCCTGTCGGTTGGTAAAC
LOC_Os03g53190
Os.4749.1.S1_at--1090--2391Chr03:30467017..30467041 (25 bp)
AAACTTGTGTTCTGTGCTGTGACTG
LOC_Os03g53190
Os.4749.1.S1_at--488--191Chr03:30467058..30467082 (25 bp)
ATTTCTACGGCTTGTTCCTTGATGT
LOC_Os03g53190
Target Sequence 
TCTGAAGGTCAAGCGTATCACCCCTCGCCATCTGCAGCTTGCCATCCGTGGAGANGAGGAGCTCGACACTCTCATCAAGG
GTACCATCGCTGGTGGAGGTGTCATTCCTCACATCCACAAGTCCCTGATCAACAAGTCCTCCAAAGAGTGAAGATTAGGA
CAGGAGCATCCTTAGTTTAAACTGGACTTTTGTGTGATGAGTCCTAGTTACCGTGTAGGTTTTAGTCAAGCTTTTCATAT
ATCAGCAATCCATCTGTGTAATGGTTTCCTCGTACTGCTTCAGTCATTGGAACACTGTATTTGTGGTCGGTTGTTAACTT
TGATTGAGTACTAAACCTTAATGCAAACTTGGTTCCCTTTGCTTAATTTGTGGCAATCTGCCGATGTCNNNNNNCACTCT
TTTCTTGCTTTCTTTTAGAGTAGTCGATTTCGTAGTACATGGCCTGCCTGGTCTCTGCAGTTATGATGTAGTCCTGTCGG
TTGGTAAACTTGTGTTCTGTGCTGTGACTGTTGTTGATGCTGTTGCATTTCTACGGCTTGTTCCTTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis