Browse Element(s) Details


Os.27808.1.S1_at

Description gb:AK067697.1
DB_XREF= gi:32977715
TID=Os.27808.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118D08, full insert sequence.
FL= gb:AK067697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5320011/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed
LOC_Os03g53180OsAffx.3598.1.S1_x_at11/113+30457943..30458401hypothetical protein
LOC_Os03g53190Os.4749.1.S1_at11/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53190Os.40159.1.A1_x_at1/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53200Os.34925.1.A1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_s_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53210Os.4846.1.S1_at1/113+30470198..30470838expressed protein
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009612biological_processresponse to mechanical stimulus
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27808.1.S1_at--497--451Chr03:30469539..30469649 (25 bp)
ATCTCCCCAACTGAGCTGAGGACAG
LOC_Os03g53200
Os.27808.1.S1_at--110--9311Chr03:30469542..30469652 (25 bp)
TCCCCAACTGAGCTGAGGACAGTGA
LOC_Os03g53200
Os.27808.1.S1_at--524--3851Chr03:30469827..30469851 (25 bp)
CTGATCCCCAAATTTGGGAGCATCT
LOC_Os03g53200
Os.27808.1.S1_at--1089--10831Chr03:30469840..30469864 (25 bp)
TTGGGAGCATCTTTTCCACTGTAAA
LOC_Os03g53200
Os.27808.1.S1_at--556--4971Chr03:30469846..30469870 (25 bp)
GCATCTTTTCCACTGTAAATTCCAT
LOC_Os03g53200
Os.27808.1.S1_at--1131--7031Chr03:30469860..30469884 (25 bp)
GTAAATTCCATTCTCTCAATTACTG
LOC_Os03g53200
Os.27808.1.S1_at--634--10671Chr03:30469865..30469889 (25 bp)
TTCCATTCTCTCAATTACTGTATTT
LOC_Os03g53200
Os.27808.1.S1_at--352--9731Chr03:30469875..30469899 (25 bp)
TCAATTACTGTATTTGAACCACAAA
LOC_Os03g53200
Os.27808.1.S1_at--234--3671Chr03:30470023..30470047 (25 bp)
CTTAGAAGGGCGTCTATCCATGTTT
LOC_Os03g53200
Os.27808.1.S1_at--719--5311Chr03:30470027..30470051 (25 bp)
GAAGGGCGTCTATCCATGTTTTTTA
LOC_Os03g53200
Os.27808.1.S1_at--760--7571Chr03:30470030..30470054 (25 bp)
GGGCGTCTATCCATGTTTTTTATTT
LOC_Os03g53200
Target Sequence 
ATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAG
GGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATAT
CTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAA
TTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGAT
TTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTTGCGAACTATGTATTAGAAATTGACATATACT
TAGAAGGGCGTCTATCCATGTTTTTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis