Browse Element(s) Details


Os.11644.1.S1_at

Description gb:AK067800.1
DB_XREF= gi:32977818
TID=Os.11644.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119M02, full insert sequence.
FL= gb:AK067800.1 gb:AK102540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5325011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein
LOC_Os03g53250Os.11644.1.S1_at11/113+30499239..30504143Protein kinase domain containing protein, expressed
LOC_Os03g53260NANA3+30508598..30509008hypothetical protein
LOC_Os03g53270Os.10787.1.S1_at11/113+30511207..30514093Stem-specific protein TSJT1, putative, expressed
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11644.1.S1_at--478--7871Chr03:30499796..30499820 (25 bp)
GGTTTGAACTTCTGACCAGCATGCC
LOC_Os03g53250
Os.11644.1.S1_at--1050--591Chr03:30499776..30499800 (25 bp)
ATGCCGCTTATTCTTTGAGTGCTGG
LOC_Os03g53250
Os.11644.1.S1_at--177--5071Chr03:30499709..30499733 (25 bp)
GCAGCATTGTTCTGAGTTCTCTGGA
LOC_Os03g53250
Os.11644.1.S1_at--180--9471Chr03:30499690..30499714 (25 bp)
TCTGGAGTTCATCCTGTGTCAGTTT
LOC_Os03g53250
Os.11644.1.S1_at--621--7451Chr03:30499675..30499699 (25 bp)
GTGTCAGTTTTGTAGCAGCCAGCCC
LOC_Os03g53250
Os.11644.1.S1_at--431--5851Chr03:30499614..30499638 (25 bp)
GACCATGTGTTGCTTGTCGTGTCAT
LOC_Os03g53250
Os.11644.1.S1_at--1071--31Chr03:30499558..30499582 (25 bp)
ATTGATTTAGGCCATTCACAACCCC
LOC_Os03g53250
Os.11644.1.S1_at--457--2951Chr03:30499533..30499557 (25 bp)
AAGGCGTCTGTCTGCTGCACATGAC
LOC_Os03g53250
Os.11644.1.S1_at--755--5811Chr03:30499511..30499535 (25 bp)
GACCCATTCTGTATTTGTATCTGTA
LOC_Os03g53250
Os.11644.1.S1_at--648--10091Chr03:30499482..30499506 (25 bp)
TATGTACAAGTGTCGGTCCATCCGT
LOC_Os03g53250
Os.11644.1.S1_at--904--571Chr03:30499456..30499480 (25 bp)
ATCCATGTAACCCTCTACTGTTGAG
LOC_Os03g53250
Target Sequence 
GGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAACCAAA
GCCGGTGGCAGCATTGTTCTGAGTTCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCCCGTTTCCCGCCTCT
TGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGCTTGTCGTGTCATTTGTTTTTGTTTTTCATTATTGCGTTAATTTAT
TGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTA
CAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis