Browse Element(s) Details


Os.17980.1.S1_at

Description gb:C96769
DB_XREF= gi:3759070
DB_XREF=C96769
CLONE=C10660_6Z
TID=Os.17980.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17980 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_171805.1 (A.thaliana) putataive transport protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5328011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein
LOC_Os03g53250Os.11644.1.S1_at11/113+30499239..30504143Protein kinase domain containing protein, expressed
LOC_Os03g53260NANA3+30508598..30509008hypothetical protein
LOC_Os03g53270Os.10787.1.S1_at11/113+30511207..30514093Stem-specific protein TSJT1, putative, expressed
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53300Os.19100.1.S1_at11/113+30543989..30546466expressed protein
LOC_Os03g53310Os.28254.1.S1_at11/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53310Os.9084.1.S1_at10/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53320OsAffx.25699.1.S1_at11/113+30553295..30553645hypothetical protein
LOC_Os03g53340Os.2292.3.S1_x_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.1.S1_a_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.2.S1_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17980.1.S1_at--318--7911Chr03:30515496..30515520 (25 bp)
GGTTCCTTTCTCACCCAGAATCTGA
LOC_Os03g53280
Os.17980.1.S1_at--828--5611Chr03:30515473..30515497 (25 bp)
GACAAGCACCTGCTTGTGCTGCCAA
LOC_Os03g53280
Os.17980.1.S1_at--899--1431Chr03:30515444..30515468 (25 bp)
AGAACTCAGAGTTGGCCTCGGCATG
LOC_Os03g53280
Os.17980.1.S1_at--505--1251Chr03:30515435..30515459 (25 bp)
AGTTGGCCTCGGCATGCAGAAACAT
LOC_Os03g53280
Os.17980.1.S1_at--440--9531Chr03:30515410..30515434 (25 bp)
TCTACAATATGGTTGGCCCAGGCCC
LOC_Os03g53280
Os.17980.1.S1_at--312--6031Chr03:30515318..30515342 (25 bp)
GAGATGGCGTTGTGCTGACATTACA
LOC_Os03g53280
Os.17980.1.S1_at--255--7351Chr03:30515280..30515304 (25 bp)
GTGAATTATCTACCGGTTCTACCTC
LOC_Os03g53280
Os.17980.1.S1_at--228--10371Chr03:30515246..30515270 (25 bp)
TTTTTTCATGAGAGGATTCGTGCGG
LOC_Os03g53280
Os.17980.1.S1_at--454--7671Chr03:30515222..30515246 (25 bp)
GGGTAGCAACCAGCGTGTGTAAAGT
LOC_Os03g53280
Os.17980.1.S1_at--700--6732Chr01:26151528..26151547 (20 bp)
GTTCATTCATTGACTGGGTGTAATT
NONE
Os.17980.1.S1_at--992--7691Chr03:30515023..30515047 (25 bp)
GGGTGTAATTTGAGCACCCTTCTGT
LOC_Os03g53280
Target Sequence 
GGTTCCTTTCTCACCCAGAATCTGACAAGCACCTGCTTGTGCTGCCAAAGAAAGAACTCAGAGTTGGCCTCGGCATGCAG
AAACATTCTACAATATGGTTGGCCCAGGCCCCAGCCCATTCAGCAAAATCTGGGGTGAAGACACAGTACAACAGAAACAC
ACTGGAAGGGATAAAATGGAGATGGCGTTGTGCTGACATTACAATCTTATTATACTGTGAATTATCTACCGGTTCTACCT
CATCTTCTTGTTTTTTCATGAGAGGATTCGTGCGGGGTAGCAACCAGCGTGTGTAAAGTTTGTATAGGATGCTTTTGGTT
AGTAGTGGTGAGGGGACGATGGTGATGATGTTGTACGGTGAAGATGTTATTTTTCGTCTTGGGGATGTAAGGAAAGGGGT
GTTAGGTTCCTCTTCTTTTNCTGNTTTGNTTCTCTATTTTGNCCCCAGAAGNGGNGGNGTTCATTCATTGACTGGGTGTA
ATTTGAGCACCCTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis