Browse Element(s) Details


Os.28254.1.S1_at

Description gb:AK072451.1
DB_XREF= gi:32982474
TID=Os.28254.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120I03, full insert sequence.
FL= gb:AK072451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5331011/11emp24/gp25L/p24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53300Os.19100.1.S1_at11/113+30543989..30546466expressed protein
LOC_Os03g53310Os.28254.1.S1_at11/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53310Os.9084.1.S1_at10/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53320OsAffx.25699.1.S1_at11/113+30553295..30553645hypothetical protein
LOC_Os03g53340Os.2292.3.S1_x_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.1.S1_a_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.2.S1_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53350NANA3+30560392..30561858Cytokinin-O-glucosyltransferase 1, putative
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28254.1.S1_at--1129--10771Chr03:30547459..30547483 (25 bp)
TTGATGTTTCACTTAGCTTCTTTGT
LOC_Os03g53310
Os.28254.1.S1_at--587--3111Chr03:30547429..30547453 (25 bp)
AATATATCTAAAGTTGTTTTCTCTT
LOC_Os03g53310
Os.28254.1.S1_at--905--10171Chr03:30547406..30547430 (25 bp)
TTTGGCTTAACATATATTCCCCTTT
LOC_Os03g53310
Os.28254.1.S1_at--992--8731Chr03:30547392..30547416 (25 bp)
TATTCCCCTTTATGGTAATTGATGT
LOC_Os03g53310
Os.28254.1.S1_at--854--4871Chr03:30547367..30547391 (25 bp)
GCTATATATAGCTTTTTCTTGCTCT
LOC_Os03g53310
Os.28254.1.S1_at--913--291Chr03:30547360..30547384 (25 bp)
ATAGCTTTTTCTTGCTCTTGTAGCA
LOC_Os03g53310
Os.28254.1.S1_at--360--10331Chr03:30547353..30547377 (25 bp)
TTTCTTGCTCTTGTAGCATGACGTT
LOC_Os03g53310
Os.28254.1.S1_at--301--4811Chr03:30547347..30547371 (25 bp)
GCTCTTGTAGCATGACGTTTTTATG
LOC_Os03g53310
Os.28254.1.S1_at--563--4991Chr03:30547338..30547362 (25 bp)
GCATGACGTTTTTATGTATTCTATT
LOC_Os03g53310
Os.28254.1.S1_at--674--6871Chr03:30547323..30547347 (25 bp)
GTATTCTATTTTTCTTATCATTATG
LOC_Os03g53310
Os.28254.1.S1_at--498--9551Chr03:30547311..30547335 (25 bp)
TCTTATCATTATGTGATCGTGGAGA
LOC_Os03g53310
Target Sequence 
TTGATGTTTCACTTAGCTTCTTTGTAGGGGAATATATCTAAAGTTGTTTTCTCTTTGGCTTAACATATATTCCCCTTTAT
GGTAATTGATGTGCTATATATAGCTTTTTCTTGCTCTTGTAGCATGACGTTTTTATGTATTCTATTTTTCTTATCATTAT
GTGATCGTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis