Browse Element(s) Details


OsAffx.25699.1.S1_at

Description tigr:9631.m05227
TID=OsAffx.25699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5332011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53300Os.19100.1.S1_at11/113+30543989..30546466expressed protein
LOC_Os03g53310Os.28254.1.S1_at11/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53310Os.9084.1.S1_at10/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53320OsAffx.25699.1.S1_at11/113+30553295..30553645hypothetical protein
LOC_Os03g53340Os.2292.3.S1_x_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.1.S1_a_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.2.S1_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53350NANA3+30560392..30561858Cytokinin-O-glucosyltransferase 1, putative
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25699.1.S1_at--34--2931Chr03:30553588..30553612 (25 bp)
AAGGCAACCCGCGAGCGTCACTATA
LOC_Os03g53320
OsAffx.25699.1.S1_at--999--2611Chr03:30553583..30553607 (25 bp)
AACCCGCGAGCGTCACTATATTGTG
LOC_Os03g53320
OsAffx.25699.1.S1_at--1119--1631Chr03:30553575..30553599 (25 bp)
AGCGTCACTATATTGTGGAGGCCGA
LOC_Os03g53320
OsAffx.25699.1.S1_at--1085--3311Chr03:30553570..30553594 (25 bp)
CACTATATTGTGGAGGCCGAGAGAT
LOC_Os03g53320
OsAffx.25699.1.S1_at--103--6271Chr03:30553548..30553572 (25 bp)
GATGTCGGGACTGCCTGGAGAGCGC
LOC_Os03g53320
OsAffx.25699.1.S1_at--332--2911Chr03:30553522..30553546 (25 bp)
AAGGAGGAGTATTGGGCGCGAGGCC
LOC_Os03g53320
OsAffx.25699.1.S1_at--1133--591Chr03:30553457..30553481 (25 bp)
ATGCCGAGGAGCACATCAAGGCTGC
LOC_Os03g53320
OsAffx.25699.1.S1_at--874--971Chr03:30553451..30553475 (25 bp)
AGGAGCACATCAAGGCTGCCGCCTG
LOC_Os03g53320
OsAffx.25699.1.S1_at--234--2951Chr03:30553440..30553464 (25 bp)
AAGGCTGCCGCCTGCAATGCCGGCA
LOC_Os03g53320
OsAffx.25699.1.S1_at--352--8231Chr03:30553419..30553443 (25 bp)
GGCAAGCCCCTCCAAGATCAAGCTT
LOC_Os03g53320
OsAffx.25699.1.S1_at--960--7671Chr03:30553325..30553349 (25 bp)
GGGTAGGGACGATTATACCATGCGA
LOC_Os03g53320
Target Sequence 
AAGGCAACCCGCGAGCGTCACTATATTGTGGAGGCCGAGAGATGTCGGGACTGCCTGGAGAGCGCCAAGGAGGAGTATTG
GGCGCGAGGCCGAGAGCTCCAAGTCCCGCGTTCCGCGCCACAAGGAGGAGGATGCCGAGGAGCACATCAAGGCTGCCGCC
TGCAATGCCGGCAAGCCCCTCCAAGATCAAGCTTGCCCAGCCTCCATGCGAGGGAGGCGGAGATGGGAAATATGGGGGAG
GGCGGGGACGGCTCCAAGCACTGGGGTAGGGACGATTATACCATGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis