Browse Element(s) Details


Os.2292.3.S1_x_at

Description gb:AK069579.1
DB_XREF= gi:32979603
TID=Os.2292.3
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2292 (NCBI UniGene Cluster)
UG_TITLE=Unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022C13, full insert sequence.
FL= gb:AK069579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5334011/11Heat shock factor protein HSF30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53300Os.19100.1.S1_at11/113+30543989..30546466expressed protein
LOC_Os03g53310Os.28254.1.S1_at11/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53310Os.9084.1.S1_at10/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53320OsAffx.25699.1.S1_at11/113+30553295..30553645hypothetical protein
LOC_Os03g53340Os.2292.3.S1_x_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.1.S1_a_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.2.S1_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53350NANA3+30560392..30561858Cytokinin-O-glucosyltransferase 1, putative
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2292.3.S1_x_at--633--5091Chr03:30555546..30555570 (25 bp)
GCACTTGTCTTTCTTTCCATTTTTT
LOC_Os03g53340
Os.2292.3.S1_x_at--256--10191Chr03:30555521..30555545 (25 bp)
TATAGTTTCGGACATCTTGTCGCCG
LOC_Os03g53340
Os.2292.3.S1_x_at--143--1991Chr03:30555462..30555486 (25 bp)
ACTGCCACAGGCGACGGAAGGTTCA
LOC_Os03g53340
Os.2292.3.S1_x_at--1137--4711Chr03:30555356..30555380 (25 bp)
GCTGGGAAGCTTCTAGATGTCCTCT
LOC_Os03g53340
Os.2292.3.S1_x_at--1073--8691Chr03:30555339..30555363 (25 bp)
TGTCCTCTAGGACGGTGGCTTCGAA
LOC_Os03g53340
Os.2292.3.S1_x_at--897--8291Chr03:30555323..30555347 (25 bp)
GGCTTCGAATGTTCTTCTTCTGGAA
LOC_Os03g53340
Os.2292.3.S1_x_at--879--8211Chr03:30555302..30555326 (25 bp)
GGAATTTGCACCTAGTATCAGCTAA
LOC_Os03g53340
Os.2292.3.S1_x_at--750--3131Chr03:30555279..30555303 (25 bp)
AATTATGTGCGCTGTATTTTGCCCA
LOC_Os03g53340
Os.2292.3.S1_x_at--478--171Chr03:30555264..30555288 (25 bp)
ATTTTGCCCATGCTACTGCCATATG
LOC_Os03g53340
Os.2292.3.S1_x_at--569--9191Chr03:30555248..30555272 (25 bp)
TGCCATATGCAACTGGTGCCTCTTA
LOC_Os03g53340
Os.2292.3.S1_x_at--660--4851Chr03:30555213..30555237 (25 bp)
GCTACTGCTGCCCTTTTAAAATTTG
LOC_Os03g53340
Target Sequence 
GCACTTGTCTTTCTTTCCATTTTTTTATAGTTTCGGACATCTTGTCGCCGCCCTGCAAGTTGCCAAAAAAAGCAGCCAAG
CCCCACTGCCACAGGCGACGGAAGGTTCAAGAAGTCGAGAAGCTTCTCCCGCGGGGGAAGCTTCTAGAGGTGTCCAGTAA
GACAGCACAGTAGCTGCGGGTGTTCAAGAAGCTGGGAAGCTTCTAGATGTCCTCTAGGACGGTGGCTTCGAATGTTCTTC
TTCTGGAATTTGCACCTAGTATCAGCTAATTATGTGCGCTGTATTTTGCCCATGCTACTGCCATATGCAACTGGTGCCTC
TTATCCCCCAACAGCTACTGCTGCCCTTTTAAAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2292.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis