Browse Element(s) Details


Os.2292.2.S1_at

Description gb:AK109590.1
DB_XREF= gi:32994799
TID=Os.2292.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2292 (NCBI UniGene Cluster)
UG_TITLE=Unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C01, full insert sequence.
FL= gb:AK109590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5334011/11Heat shock factor protein HSF30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53300Os.19100.1.S1_at11/113+30543989..30546466expressed protein
LOC_Os03g53310Os.28254.1.S1_at11/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53310Os.9084.1.S1_at10/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53320OsAffx.25699.1.S1_at11/113+30553295..30553645hypothetical protein
LOC_Os03g53340Os.2292.3.S1_x_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.1.S1_a_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.2.S1_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53350NANA3+30560392..30561858Cytokinin-O-glucosyltransferase 1, putative
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2292.2.S1_at--207--2951Chr03:30555045..30555069 (25 bp)
AAGGCTGCCTGTTTTGTCGTGTGGT
LOC_Os03g53340
Os.2292.2.S1_at--354--7311Chr03:30554963..30554987 (25 bp)
GTGCTCCATTTTGTTTGAGCCGTGC
LOC_Os03g53340
Os.2292.2.S1_at--656--5871Chr03:30554935..30554959 (25 bp)
GAGCGCGTGTCCTTGACCAGGGAAA
LOC_Os03g53340
Os.2292.2.S1_at--868--5571Chr03:30554790..30554814 (25 bp)
GAAAGTGGTTCCCAGCTCATCAAAT
LOC_Os03g53340
Os.2292.2.S1_at--509--6931Chr03:30554749..30554773 (25 bp)
GTAGGAGTATCAGGCTCCACCTGTA
LOC_Os03g53340
Os.2292.2.S1_at--29--10211Chr03:30554653..30554677 (25 bp)
TATTTCAGGAGTACGGGTGTCGCTT
LOC_Os03g53340
Os.2292.2.S1_at--507--9331Chr03:30554634..30554658 (25 bp)
TCGCTTGCTGCGAGATTTCACAACA
LOC_Os03g53340
Os.2292.2.S1_at--665--971Chr03:30554610..30554634 (25 bp)
AGGAGACTGTCTGTCACGGCGTTGC
LOC_Os03g53340
Os.2292.2.S1_at--13--6691Chr03:30554590..30554614 (25 bp)
GTTGCTGTACCACCTCTTTAAAATG
LOC_Os03g53340
Os.2292.2.S1_at--34--10011Chr03:30554539..30554563 (25 bp)
TAGAGTAACACTCGTACTACCCGTT
LOC_Os03g53340
Os.2292.2.S1_at--183--9891Chr03:30554525..30554549 (25 bp)
TACTACCCGTTTCCGCTAAATGTCA
LOC_Os03g53340
Target Sequence 
AAGGCTGCCTGTTTTGTCGTGTGGTGACAGTTCTGAACTTTTCATCTATACTGGAGTGCTACGTGGAGTATATACATACA
AAGTGCTCCATTTTGTTTGAGCCGTGCCGTGAGCGCGTGTCCTTGACCAGGGAAAAAAAATGTTTTGCTTTCAGGTTGCA
GAGGACAAGAGGATGTCGGTGCCAAAGATATTTTCAAACATACTAACCGAAAAGGGCACCAAAATATCATCATCTGAAGA
TCTTAACAGTATCAAGAAAGTGGTTCCCAGCTCATCAAATCTAGGAGTACTACGTGGTAGGAGTATCAGGCTCCACCTGT
ACCTGGTGTCTTAATTAAGGAAAAAAGAACAGAGAAACGCTCGGAGAGATGATTCAGAAGCTTGACAGCGAGTATTTCAG
GAGTACGGGTGTCGCTTGCTGCGAGATTTCACAACAGGAGACTGTCTGTCACGGCGTTGCTGTACCACCTCTTTAAAATG
GATCGTGGGACAGGACAGTTGACACGTAGAGTAACACTCGTACTACCCGTTTCCGCTAAATGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2292.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis