Browse Element(s) Details


Os.19100.1.S1_at

Description gb:AK071178.1
DB_XREF= gi:32981201
TID=Os.19100.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083K21, full insert sequence.
FL= gb:AK071178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5330011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53280Os.17980.1.S1_at11/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53280Os.51285.1.S1_at1/113+30514995..30532454WD-40 repeat family protein, putative, expressed
LOC_Os03g53300Os.19100.1.S1_at11/113+30543989..30546466expressed protein
LOC_Os03g53310Os.28254.1.S1_at11/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53310Os.9084.1.S1_at10/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53320OsAffx.25699.1.S1_at11/113+30553295..30553645hypothetical protein
LOC_Os03g53340Os.2292.3.S1_x_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.1.S1_a_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.2.S1_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53350NANA3+30560392..30561858Cytokinin-O-glucosyltransferase 1, putative
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19100.1.S1_at--322--6591Chr03:30545402..30545426 (25 bp)
GATTGAAGCTCTGCGGTCCAATGGA
LOC_Os03g53300
Os.19100.1.S1_at--255--6171Chr03:30545425..30545449 (25 bp)
GAGGAGGAACCAGCTTGACCTTCAA
LOC_Os03g53300
Os.19100.1.S1_at--673--1991Chr03:30545455..30545797 (25 bp)
ACTCCTTTGAGGTCCGTGAATGCAT
LOC_Os03g53300
Os.19100.1.S1_at--482--7351Chr03:30545788..30545812 (25 bp)
GTGAATGCATCCTGTGGCTCAGTAT
LOC_Os03g53300
Os.19100.1.S1_at--1138--111Chr03:30545816..30545840 (25 bp)
ATTCATTACAATCCTGTGCACACCA
LOC_Os03g53300
Os.19100.1.S1_at--819--6431Chr03:30545849..30545873 (25 bp)
GATCATCAGATGGTCTACTACCCCA
LOC_Os03g53300
Os.19100.1.S1_at--423--7451Chr03:30545877..30545901 (25 bp)
GTGTCAGCTGACGTTTTGCATCAGT
LOC_Os03g53300
Os.19100.1.S1_at--707--10251Chr03:30545911..30545935 (25 bp)
TTTGTGCCTTAATAGCGAACGCTTA
LOC_Os03g53300
Os.19100.1.S1_at--34--5511Chr03:30546073..30546097 (25 bp)
GAACAAATGGCTGTCACGGGCAGTT
LOC_Os03g53300
Os.19100.1.S1_at--208--411Chr03:30546108..30546132 (25 bp)
ATCAGTAGTAGCTAGTCGCATGCAA
LOC_Os03g53300
Os.19100.1.S1_at--197--2731Chr03:30546287..30546311 (25 bp)
AAGCACGTGTGCAGTTTTACTACAT
LOC_Os03g53300
Target Sequence 
GATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAANGTTCACTCCTTTGAGGTCCGTGAATGCATCC
TGTGGCTCAGTATAGTATTCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTG
TCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTT
ACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGC
AATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCA
GTTTTACTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis