Browse Element(s) Details


Os.10811.1.S1_at

Description gb:AK064094.1
DB_XREF= gi:32974112
TID=Os.10811.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E12, full insert sequence.
FL= gb:AK064094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0923011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09200Os.19128.1.S1_at11/111+4618480..4628164Protein kinase domain containing protein, expressed
LOC_Os01g09206NANA1+4639103..4639912retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09212NANA1+4640863..4641498retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09220Os.3808.4.S1_x_at11/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09220Os.3808.2.S1_x_at2/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09230Os.10811.1.S1_at11/111+4646958..4648763expressed protein
LOC_Os01g09240OsAffx.9699.1.S1_at6/111+4659641..4661103retrotransposon protein, putative, LINE subclass
LOC_Os01g09246Os.12093.1.S1_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09246Os.12093.2.S1_x_at11/111+4670209..4681569glycine-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10811.1.S1_at--188--7331Chr01:4648186..4648210 (25 bp)
GTGCAGGTCACTTACGCGTATGTCA
LOC_Os01g09230
Os.10811.1.S1_at--974--10091Chr01:4648204..4648228 (25 bp)
TATGTCACGCGTGCAGTGGAGGCCA
LOC_Os01g09230
Os.10811.1.S1_at--1107--6431Chr01:4648252..4648276 (25 bp)
GATCAGGGAGGATGAGCTCATTTCT
LOC_Os01g09230
Os.10811.1.S1_at--376--7651Chr01:4648280..4648304 (25 bp)
GGGAGATCACTGCTTGCACCAGCAC
LOC_Os01g09230
Os.10811.1.S1_at--310--3631Chr01:4648292..4648316 (25 bp)
CTTGCACCAGCACTATCCGAGATAG
LOC_Os01g09230
Os.10811.1.S1_at--481--10151Chr01:4648305..4648329 (25 bp)
TATCCGAGATAGCATTGTGCTCCAT
LOC_Os01g09230
Os.10811.1.S1_at--730--851Chr01:4648352..4648376 (25 bp)
ATGGCATTGTGGCTGATGGATCTAC
LOC_Os01g09230
Os.10811.1.S1_at--565--831Chr01:4648367..4648391 (25 bp)
ATGGATCTACTGTCCGGCTATTGCG
LOC_Os01g09230
Os.10811.1.S1_at--163--2031Chr01:4648472..4648496 (25 bp)
ACTACTGCAGACAAACCGTTGATTT
LOC_Os01g09230
Os.10811.1.S1_at--710--6852Chr01:4648692..4648716 (25 bp)
GTTTGCTCCCTGGAATTAGGCACTA
LOC_Os01g09230
Os.10811.1.S1_at--754--8631Chr01:4648735..4648759 (25 bp)
TGAGGAAACCGTGCCGGCCAAAGAT
LOC_Os01g09230
Target Sequence 
GTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTCTCCGTTGAGCTTCTGCATGATCAGGGAGGATG
AGCTCATTTCTGTGGGGAGATCACTGCTTGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAG
CAGATGATGGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCNCGTGATTGGCGTCTGTTTGGATGAGGTGCTG
ATAGTGACAATTGTTGCTCAAGATGGTGNCCTTGCAAAGGCAACTAACTACTGCAGACAAACCGTTGATTTTACACCTNG
TGTCAATGGTGGAGACGAAGCTCGAGTTGTGGGTGGTGTCGGCAGTTTTCNTTGTGAAGGTTATTTGGTCGTTAATGGNC
CCAGTTATTGACNAGTAGTTTGTTNTCTTTATCATCACGAATNTAGGCTTNTAGTTGTGTACTGATTGTCTGCAATAGTT
ATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCACTAGCAATAGCATGCCNCGGCTGAGGAAACC
GTGCCGGCCAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis