Browse Element(s) Details


Os.10825.1.S1_at

Description gb:AK073067.1
DB_XREF= gi:32983090
TID=Os.10825.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022A04, full insert sequence.
FL= gb:AK073067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g166308/11UPF0071 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16600OsAffx.22947.2.S1_x_at8/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.1.S1_x_at7/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.3.S1_x_at5/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.5.S1_x_at1/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16610NANA5+9396669..9397868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16620Os.56292.1.S1_x_at1/115+9399028..9403076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16630Os.10825.1.S1_at8/115+9411679..9415435UPF0071 protein, putative, expressed
LOC_Os05g16640OsAffx.26779.2.S1_at11/115+9418028..9422983expressed protein
LOC_Os05g16640Os.51733.1.S1_x_at11/115+9418028..9422983expressed protein
LOC_Os05g16640OsAffx.26779.1.S1_x_at2/115+9418028..9422983expressed protein
LOC_Os05g16640Os.50315.2.A1_at1/115+9418028..9422983expressed protein
LOC_Os05g16660Os.48078.1.S1_at11/115+9428102..9433771Eukaryotic translation initiation factor 3 subunit 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10825.1.S1_at--599--6131Chr05:9415015..9415039 (25 bp)
GAGGGTCAGATCTTCAACCGCTCAA
LOC_Os05g16630
Os.10825.1.S1_at--519--8891Chr05:9415055..9415079 (25 bp)
TGAGTATGAAGTGTTCCACTCCCCT
LOC_Os05g16630
Os.10825.1.S1_at--787--1991Chr05:9415072..9415096 (25 bp)
ACTCCCCTGTAACATCAAGTTTCTT
LOC_Os05g16630
Os.10825.1.S1_at--950--6771Chr05:9415197..9415221 (25 bp)
GTTAGCTGCATTTCATTCATACTGG
LOC_Os05g16630
Os.10825.1.S1_at--145--6631Chr05:9415244..9415268 (25 bp)
GTTGGTATGCTTTACCCATAACAGT
LOC_Os05g16630
Os.10825.1.S1_at--859--9891Chr05:9415286..9415310 (25 bp)
TACTAGCTCCTACGTTGGTCATCAT
LOC_Os05g16630
Os.10825.1.S1_at--1156--7811Chr05:9415302..9415326 (25 bp)
GGTCATCATGCTGCCAAATTACTGG
LOC_Os05g16630
Os.10825.1.S1_at--991--6971Chr05:9415368..9415392 (25 bp)
GTACCATCTGTAACCAATTCACTGT
LOC_Os05g16630
Os.10825.1.S1_at--605--10851Chr05:9415419..9415443 (25 bp)
TTGGATTTAGTTCTCTCACACTGGC
NONE
Os.10825.1.S1_at--52--10771Chr05:9415462..9415486 (25 bp)
TTGAGTTGGATTCCGCAGCAGCGAT
NONE
Os.10825.1.S1_at--691--731Chr05:9415485..9415509 (25 bp)
ATGTTAACTCATGCCTCCTTTGGAA
NONE
Target Sequence 
GAGGGTCAGATCTTCAACCGCTCAAGATTCTGATTCTGATTGAGTATGAAGTGTTCCACTCCCCTGTAACATCAAGTTTC
TTTTGTACTCTAGTTCTCAAAATATCTCTGTGTTTGTGTAATATGTATTCCGAATATTATCAACCTGGTTAGGAAATGAG
TGACTTGAAAATGTACTGCCTAGTTAGCTGCATTTCATTCATACTGGCAAGTAGGCGTATGTGTTATCAGTTGGTATGCT
TTACCCATAACAGTATCTACNAAAGGAGTTTCTACTAGCTCCTACGTTGGTCATCATGCTGCCAAATTACTGGAGTAAAC
TAGTGTTTCAGCTAGAATGCTTGATTGGTGACTAGTACCATCTGTAACCAATTCACTGTGAACCATTACAGTTGCAGTTG
ATCAATTGGATTTAGTTCTCTCACACTGGCTTTGGTTTTGGTTTCAATTTGAGTTGGATTCCGCAGCAGCGATGTTAACT
CATGCCTCCTTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis