Browse Element(s) Details


Os.10870.1.S1_at

Description gb:AK106338.1
DB_XREF= gi:32991547
TID=Os.10870.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G04, full insert sequence.
FL= gb:AK106338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5189011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein
LOC_Os02g51930Os.53614.1.S1_at11/112+31800108..31801997Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10870.1.S1_at--950--1771Chr02:31780710..31780734 (25 bp)
ACCGGATTTCAGACTCCAGTTGCCC
LOC_Os02g51890
Os.10870.1.S1_at--1134--8951Chr02:31780761..31780924 (25 bp)
TGAAACAACCGGTGCTCAATCAGCT
LOC_Os02g51890
Os.10870.1.S1_at--1090--1151Chr02:31780930..31780954 (25 bp)
AGTCTCCGCGAGTGCAGCTGCAACT
LOC_Os02g51890
Os.10870.1.S1_at--543--6411Chr02:31781003..31781027 (25 bp)
GATCTAAACACCTCGAACTGACTTG
LOC_Os02g51890
Os.10870.1.S1_at--216--2991Chr02:31781057..31781081 (25 bp)
AATGTCAGCCCACATGGTGCCATGG
LOC_Os02g51890
Os.10870.1.S1_at--364--811Chr02:31781078..31781102 (25 bp)
ATGGTGGTCTGTAACAGGGCTCCAA
LOC_Os02g51890
Os.10870.1.S1_at--505--1071Chr02:31781093..31781117 (25 bp)
AGGGCTCCAAGCACTCATTTCTTGA
LOC_Os02g51890
Os.10870.1.S1_at--827--3111Chr02:31781170..31781194 (25 bp)
AATTTTCACAATGCATTTCTTCGGT
LOC_Os02g51890
Os.10870.1.S1_at--144--10571Chr02:31781186..31781210 (25 bp)
TTCTTCGGTGAATCCATTGTATGGC
LOC_Os02g51890
Os.10870.1.S1_at--823--8751Chr02:31781203..31781227 (25 bp)
TGTATGGCCCAACTGAACTTCACGA
LOC_Os02g51890
Os.10870.1.S1_at--544--171Chr02:31781241..31781265 (25 bp)
ATTTTCCATAATATCTTCCGGCGCG
LOC_Os02g51890
Target Sequence 
ACCGGATTTCAGACTCCAGTTGCCCCCTCATGCACTCTCAAGGCAACCAGATGAAACAACCGGTGCTCAATCAGCTCCGC
CAGTCTCCGCGAGTGCAGCTGCAACTCCAACCACAGACAGCAAGGAAGCATCAAAGACTGTAGAATCAAATTCAGATCTA
AACACCTCGAACTGACTTGGTGAACTGAAAATTCTTCCGAAATGACTCAATGTCAGCCCACATGGTGCCATGGTGGTCTG
TAACAGGGCTCCAAGCACTCATTTCTTGACTGAAAAAAAGCACCNAAAGAATTGTTCTTTCATTATTTCATATTCTTTTC
CAATTTTCACAATGCATTTCTTCGGTGAATCCATTGTATGGCCCAACTGAACTTCACGAAAAAAAATCTGTAATTTTCCA
TAATATCTTCCGGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis