Browse Element(s) Details


Os.10871.1.S1_at

Description gb:AK065167.1
DB_XREF= gi:32975185
TID=Os.10871.1
CNT=53
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.10871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C13, full insert sequence.
FL= gb:AK060952.1 gb:AK065167.1 gb:AK104792.1 gb:AK098867.1 gb:AK099783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2235411/11Polyadenylate-binding protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22310Os.45212.1.S1_x_at1/118+13313954..13318784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22320NANA8+13320232..13322948hypothetical protein
LOC_Os08g22330NANA8+13324398..13328387retrotransposon protein, putative, unclassified
LOC_Os08g22340NANA8+13329727..13335234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22354Os.10871.1.S1_at11/118+13339181..13346628Polyadenylate-binding protein 2, putative, expressed
LOC_Os08g22370OsAffx.29306.1.S1_at11/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.24405.1.S1_at3/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.39684.2.S1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.29667.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.7641.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.38992.1.A1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22380Os.46874.2.S1_at11/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22380Os.46874.1.S1_x_at4/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000289biological_processpoly(A) tail shortening
GO:0006397biological_processmRNA processing
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008143molecular_functionpoly(A) binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10871.1.S1_at--103--6831Chr08:13345905..13345929 (25 bp)
GTTTAGTGCCATCCCCATATGAGAT
LOC_Os08g22354
Os.10871.1.S1_at--741--1711Chr08:13345960..13345984 (25 bp)
ACCACCGCAGGTTCCAATTGGAGCA
LOC_Os08g22354
Os.10871.1.S1_at--919--3171Chr08:13345974..13345998 (25 bp)
CAATTGGAGCATTGGCCTCTGCACT
LOC_Os08g22354
Os.10871.1.S1_at--977--6811Chr08:13346137..13346161 (25 bp)
GTTTATACCCGCTTGTTGATCAGCT
LOC_Os08g22354
Os.10871.1.S1_at--792--5071Chr08:13346175..13346199 (25 bp)
GCAGCGAAGGTCACTGGCATGCTTT
LOC_Os08g22354
Os.10871.1.S1_at--735--1391Chr08:13346212..13346236 (25 bp)
AGACTGAAGTTCTCCATCTCATTGA
LOC_Os08g22354
Os.10871.1.S1_at--8--1171Chr08:13346236..13346260 (25 bp)
AGTCACCTGATGCTCTTAAGGCCAA
LOC_Os08g22354
Os.10871.1.S1_at--819--8191Chr08:13346276..13346300 (25 bp)
GGAAGTTCTCCGTAATGCTCAGCAG
LOC_Os08g22354
Os.10871.1.S1_at--587--5131Chr08:13346307..13346331 (25 bp)
GCAAATACCCCAACTGATCAGCTAG
LOC_Os08g22354
Os.10871.1.S1_at--267--4651Chr08:13346353..13346377 (25 bp)
GCGTCGTTTCTTAACTTGGTTGGCA
LOC_Os08g22354
Os.10871.1.S1_at--549--9651Chr08:13346476..13346500 (25 bp)
TCAGTTACTTCAGCATTGTGTGGAT
LOC_Os08g22354
Target Sequence 
GTTTAGTGCCATCCCCATATGAGATGGGAAGAATGCCTCTNAGTGATGCTGGTGCACCACCGCAGGTTCCAATTGGAGCA
TTGGCCTCTGCACTGGCCAATTCACCCCCAGATCAGCAAAGACTGATGCTTGGTGAAAGTTTATACCCGCTTGTTGATCA
GCTGGAGCATGATCAGGCAGCGAAGGTCACTGGCATGCTTTTGGAGATGGACCAGACTGAAGTTCTCCATCTCATTGAGT
CACCTGATGCTCTTAAGGCCAAGGTCGCTGAGGCTATGGAAGTTCTCCGTAATGCTCAGCAGCAGCAGGCAAATACCCCA
ACTGATCAGCTAGCTGCTCTCACCCTGAGCGACGGCGTCGTTTCTTAACTTGGTTGGCATCTTATATCTGAGACTGCAAG
TGATGTAGTATGTACTTGGTGTGTTTTGGAACTTGAACCTGTGGGGAAGTCTGTNTTTATCTTTGTTAAACGGCAGTTCA
GTTACTTCAGCATTGTGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis