Browse Element(s) Details


Os.10876.1.S1_at

Description gb:AU094053
DB_XREF= gi:8856735
DB_XREF=AU094053
CLONE=E2121
TID=Os.10876.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10876 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_176013.1 (A.thaliana) transcription factor, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0745011/11Nuclear transcription factor Y subunit gamma, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07400NANA2+3821687..3824174retrotransposon protein, putative, unclassified
LOC_Os02g07410Os.7295.1.S1_at10/112+3827833..3830155Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os02g07420Os.55262.1.S1_at11/112+3830522..3832332expressed protein
LOC_Os02g07420Os.55262.1.S1_x_at11/112+3830522..3832332expressed protein
LOC_Os02g07430Os.56165.1.S1_at11/112+3833127..3837132MADS-box protein ZMM17, putative, expressed
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07470OsAffx.11928.1.S1_at11/112+3863744..3864874hypothetical protein
LOC_Os02g07490Os.48052.1.S1_at11/112+3868112..3872942Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10876.1.S1_at--621--6511Chr02:3846731..3846755 (25 bp)
GATATCTATGACTTCTTGGTGGACA
LOC_Os02g07450
Os.10876.1.S1_at--1030--6111Chr02:3846663..3846687 (25 bp)
GAGGGTTGGCCTACCGCCTAATGTG
LOC_Os02g07450
Os.10876.1.S1_at--295--7571Chr02:3846636..3846660 (25 bp)
GGGCGCAGCAGACACATATCCATAT
LOC_Os02g07450
Os.10876.1.S1_at--990--10131Chr02:3846620..3846644 (25 bp)
TATCCATATTACTACGTGCCAGCGC
LOC_Os02g07450
Os.10876.1.S1_at--625--7511Chr02:3846565..3846589 (25 bp)
GTGGACAGCAAGGTCACCCGGTGAC
LOC_Os02g07450
Os.10876.1.S1_at--294--1811Chr02:3846550..3846574 (25 bp)
ACCCGGTGACGTATGTGTGGCAGCA
LOC_Os02g07450
Os.10876.1.S1_at--353--1371Chr02:3846495..3846519 (25 bp)
AGAGCAGCACTCTCTGCCAGAAAGT
LOC_Os02g07450
Os.10876.1.S1_at--907--31Chr02:3846431..3846455 (25 bp)
ATTGTCCTGTGAACTTAGGGCCTCT
LOC_Os02g07450
Os.10876.1.S1_at--935--10071Chr02:3846416..3846440 (25 bp)
TAGGGCCTCTAAAACTCAGTGCTCT
LOC_Os02g07450
Os.10876.1.S1_at--343--9091Chr02:3846397..3846421 (25 bp)
TGCTCTTGTCAAAACTATTCCCATG
LOC_Os02g07450
Os.10876.1.S1_at--165--6971Chr02:3846243..3846267 (25 bp)
GTACCTTACCTTTCATCAGTTTCTA
LOC_Os02g07450
Target Sequence 
GATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCT
ACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGATCAGGAATGA
TGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGAGGCCCCTGAAGAG
CAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGG
CCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTT
TCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATG
TAGTAACTGTACCTTACCTTTCATCAGTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis