Browse Element(s) Details


Os.11002.1.S1_at

Description gb:AK121222.1
DB_XREF= gi:37990845
TID=Os.11002.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090H22, full insert sequence.
FL= gb:AK121222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4421011/11Dihydroneopterin aldolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44170OsAffx.17512.1.S1_at11/118+27670191..27677162transposon protein, putative, unclassified
LOC_Os08g44180OsAffx.6131.1.S1_at11/118+27678174..27681514expressed protein
LOC_Os08g44180Os.15204.1.S1_at1/118+27678174..27681514expressed protein
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006760biological_processfolic acid and derivative metabolism
GO:0004150molecular_functiondihydroneopterin aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11002.1.S1_at--947--1891Chr08:27700380..27700404 (25 bp)
ACGTCGACGCCTGGATGGATCTCGC
LOC_Os08g44210
Os.11002.1.S1_at--464--7111Chr08:27700439..27700462 (24 bp)
GTCAGCTACACCGAAATCTACAGGA
LOC_Os08g44210
Os.11002.1.S1_at--824--1451Chr08:27700899..27700923 (25 bp)
AGAATGTAGTCGAAGGCCCGTCGCA
LOC_Os08g44210
Os.11002.1.S1_at--560--2231Chr08:27700923..27700947 (25 bp)
ACAATCTGTTGGAATCGGTGGCTCA
LOC_Os08g44210
Os.11002.1.S1_at--101--3991Chr08:27700938..27700962 (25 bp)
CGGTGGCTCAGTCGATTGCAAACTC
LOC_Os08g44210
Os.11002.1.S1_at--893--10731Chr08:27700953..27700977 (25 bp)
TTGCAAACTCAACCCTGCTCAAGTT
LOC_Os08g44210
Os.11002.1.S1_at--150--6711Chr08:27700975..27700999 (25 bp)
GTTCCCTCAGATTTCTGCAGTTCGA
LOC_Os08g44210
Os.11002.1.S1_at--875--5551Chr08:27701011..27701035 (25 bp)
GAAACCTCATGTTGCTGTTCAGGGA
LOC_Os08g44210
Os.11002.1.S1_at--472--6091Chr08:27701034..27701058 (25 bp)
GAGTCCTCGACTATTTGGGCGTGGA
LOC_Os08g44210
Os.11002.1.S1_at--1120--7011Chr08:27701134..27701158 (25 bp)
GTACTTGTCTTATCTTTATTGCTCG
LOC_Os08g44210
Os.11002.1.S1_at--801--10211Chr08:27701174..27701198 (25 bp)
TATTCACTCAGTATCCATGTCAAGA
LOC_Os08g44210
Target Sequence 
ACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTAC
AGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCTGTTGGAATCGGTGGCTCAGTCGATTGCAAACTCAACCCT
GCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGAGAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATT
TGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTAC
TTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis