Browse Element(s) Details


Os.11038.1.S1_at

Description gb:AK104182.1
DB_XREF= gi:32989391
TID=Os.11038.1
CNT=183
FEA=FLmRNA
TIER=FL+Stack
STK=37
UG=Os.11038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20522 stress-related protein-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C04, full insert sequence.
FL= gb:AK105010.2 gb:AK104182.1 gb:AK073988.1 gb:AK106149.1 gb:AK104568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4751011/11Stress-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11038.1.S1_at--499--3211Chr07:28410615..28410639 (25 bp)
CAAGGACCTCTACGTGCGCTACGAG
LOC_Os07g47510
Os.11038.1.S1_at--1115--1051Chr07:28410704..28410728 (25 bp)
AGGTGGCGCAGATCGCCGTGCCCAC
LOC_Os07g47510
Os.11038.1.S1_at--763--1051Chr07:28410782..28410806 (25 bp)
AGGGTTACACCGGAGCACAGTACCT
LOC_Os07g47510
Os.11038.1.S1_at--532--6071Chr07:28410847..28410871 (25 bp)
GAGTTATCGCCGGAGGCCCAGCCGT
LOC_Os07g47510
Os.11038.1.S1_at--525--9351Chr07:28410871..28410895 (25 bp)
TCGAAGAGCGAGTCGGCGAAGACCC
LOC_Os07g47510
Os.11038.1.S1_at--999--2751Chr07:28410889..28410913 (25 bp)
AAGACCCAGTAGGTGAGGTCACCGC
LOC_Os07g47510
Os.11038.1.S1_at--1115--1031Chr07:28410920..28410944 (25 bp)
AGGTGAGAGGTAGCCTTCGCCTGAA
LOC_Os07g47510
Os.11038.1.S1_at--697--3632Chr07:28410934..28410958 (25 bp)
CTTCGCCTGAAGTCCTGAACTGAAT
LOC_Os07g47510
Os.11038.1.S1_at--960--631Chr07:28411008..28411032 (25 bp)
ATGCATGTGACGACATTTTCGTGGA
LOC_Os07g47510
Os.11038.1.S1_at--1060--6291Chr07:28411034..28411058 (25 bp)
GATGATGTTCTACTTAGCTCTTTTA
LOC_Os07g47510
Os.11038.1.S1_at--755--1571Chr07:28411049..28411073 (25 bp)
AGCTCTTTTACTTTGTGTTGTGGCG
LOC_Os07g47510
Target Sequence 
CAAGGACCTCTACGTGCGCTACGAGCCGGCGGCGGAGCACCTCGCCGTCTCCACCTGGCGCTCGCTCAACAACCTGCCGC
TGTTCCCGCAGGTGGCGCAGATCGCCGTGCCCACCGCCGCCTACTGGGCCGAGAAGTACAACAAGGTGATCGCCGCCGCG
GCCGACAAGGGTTACACCGGAGCACAGTACCTCCCCGCCATCCCCACCGAGCGCATCGCCAAGGTTTTCGGCGAGTTATC
GCCGGAGGCCCAGCCGTCGAAGAGCGAGTCGGCGAAGACCCAGTAGGTGAGGTCACCGCGCCTGAAGGTGAGAGGTAGCC
TTCGCCTGAAGTCCTGAACTGAATAAGTAAGAGTGGGGCGCTTATGGCAGCAGAAAAATGGTGTTTTAGATGTATGCATG
TGACGACATTTTCGTGGATGATGATGTTCTACTTAGCTCTTTTACTTTGTGTTGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis