Browse Element(s) Details


Os.11048.1.A1_at

Description gb:AK060457.1
DB_XREF= gi:32970475
TID=Os.11048.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-A09, full insert sequence.
FL= gb:AK060457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3257011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32544OsAffx.14921.1.S1_x_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.14921.1.S1_at11/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544Os.17807.1.S1_at10/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32544OsAffx.17881.1.S1_at1/115+18938548..18947702glycosyltransferase, putative, expressed
LOC_Os05g32560Os.24864.1.S1_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32560Os.9332.2.S1_x_at1/115+18957264..18962941transposon protein, putative, unclassified
LOC_Os05g32570Os.11048.1.A1_at11/115+18972424..18976455expressed protein
LOC_Os05g32580Os.24657.1.S1_at11/115+18988309..18995082expressed protein
LOC_Os05g32590Os.51750.1.S1_at11/115+18997886..18999918expressed protein
LOC_Os05g32600Os.2689.1.S1_a_at11/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32600Os.12361.1.S1_at1/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11048.1.A1_at--802--6991Chr05:18972941..18972965 (25 bp)
GTACGGATACGACCTGGCCTTGTAA
LOC_Os05g32570
Os.11048.1.A1_at--651--1291Chr05:18972801..18972825 (25 bp)
AGATCCTGCCGATATCGTTCTTGAT
LOC_Os05g32570
Os.11048.1.A1_at--555--8831Chr05:18972777..18972801 (25 bp)
TGATATCCCATCACTGACAGAGGCT
LOC_Os05g32570
Os.11048.1.A1_at--544--3671Chr05:18972744..18972768 (25 bp)
CTTTTGTTCATAGTCTCGCGGTATT
LOC_Os05g32570
Os.11048.1.A1_at--1036--9331Chr05:18972729..18972753 (25 bp)
TCGCGGTATTCTTTTGACCCCATTA
LOC_Os05g32570
Os.11048.1.A1_at--299--8931Chr05:18972715..18972739 (25 bp)
TGACCCCATTACCTGATTTCTTGCT
LOC_Os05g32570
Os.11048.1.A1_at--795--3791Chr05:18972692..18972716 (25 bp)
CTCCCTTCCATTGTGCAGTATTTCA
LOC_Os05g32570
Os.11048.1.A1_at--967--171Chr05:18972666..18972690 (25 bp)
ATTTAGTAAGGTCCCAATCATGCAA
LOC_Os05g32570
Os.11048.1.A1_at--330--6671Chr05:18972630..18972654 (25 bp)
GTTGCACATAGGCACCATCGCATAG
LOC_Os05g32570
Os.11048.1.A1_at--33--531Chr05:18972614..18972638 (25 bp)
ATCGCATAGGCATGGCGGGTTGTAT
LOC_Os05g32570
Os.11048.1.A1_at--627--9711Chr05:18972493..18972517 (25 bp)
TAATTATGGGCCTGACTCCTTTTGT
LOC_Os05g32570
Target Sequence 
GTACGGATACGACCTGGCCTTGTAACCCCACGTTGGGGATGGGGGGAGGAGACATATGAGAGTAAAGGTGAGGTTGTAGG
CGTTGATGCAAATGGGAAACTGAGGATCAAGTTCAGATGGAGGGATGGGCTTTGGATTGGAGATCCTGCCGATATCGTTC
TTGATGATATCCCATCACTGACAGAGGCTTNTAATGGCTTTTGTTCATAGTCTCGCGGTATTCTTTTGACCCCATTACCT
GATTTCTTGCTCCCTTCCATTGTGCAGTATTTCAAATTTAGTAAGGTCCCAATCATGCAATGGAGTTGCAAGTTGCACAT
AGGCACCATCGCATAGGCATGGCGGGTTGTATTTCGTGTTGATAAAGCAGGGGGAAAAGAACGAAATGAAGGCTGAAAAA
GAACTTTGAAATAGACATGATAACCNCCNCCTAGGTTTTTTACATGTATAATTATGGGCCTGACTCCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11048.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis