Browse Element(s) Details


Os.11085.1.S1_at

Description gb:AK073606.1
DB_XREF= gi:32983629
TID=Os.11085.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048N17, full insert sequence.
FL= gb:AK073606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3514011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35110OsAffx.30226.2.S1_s_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.30226.2.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.442.1.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.12942.2.S1_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35120Os.43624.1.S1_at1/116+20431372..20434732retrotransposon protein, putative, LINE subclass
LOC_Os06g35130OsAffx.15753.1.S1_at10/116+20441593..20443070hypothetical protein
LOC_Os06g35140Os.11085.1.S1_at11/116+20453405..20456006myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g35150Os.47463.1.S1_x_at5/116+20471293..20474639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35150Os.14491.2.S1_x_at4/116+20471293..20474639transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11085.1.S1_at--639--7211Chr06:20454011..20454035 (25 bp)
GTCGCAAGCGAAGCTGCCCTAGGTT
LOC_Os06g35140
Os.11085.1.S1_at--879--10071Chr06:20453904..20454016 (25 bp)
TAGGTTCCCTGCTCGAGAGGGCAAA
LOC_Os06g35140
Os.11085.1.S1_at--76--2771Chr06:20453881..20453905 (25 bp)
AAGACGAAAGCGACCGAGGCGATGC
LOC_Os06g35140
Os.11085.1.S1_at--719--4051Chr06:20453862..20453886 (25 bp)
CGATGCGCCTCGAGACGCCGGTGAA
LOC_Os06g35140
Os.11085.1.S1_at--302--8111Chr06:20453796..20453820 (25 bp)
GGACGCCGGACTTGCAGCTGAGTTT
LOC_Os06g35140
Os.11085.1.S1_at--1124--10731Chr06:20453785..20453809 (25 bp)
TTGCAGCTGAGTTTGAGCCCGAACG
LOC_Os06g35140
Os.11085.1.S1_at--219--6051Chr06:20453757..20453781 (25 bp)
GAGATCACAGATCAGCCGGCGAGAA
LOC_Os06g35140
Os.11085.1.S1_at--332--1531Chr06:20453584..20453608 (25 bp)
AGCAGTAGCAAGAAGGCCGCTCTGG
LOC_Os06g35140
Os.11085.1.S1_at--551--10191Chr06:20453508..20453532 (25 bp)
TTTCAAGTACTTGTCCCAAGGCCTT
LOC_Os06g35140
Os.11085.1.S1_at--55--1411Chr06:20453480..20453504 (25 bp)
AGACATGCACACTGCACCATGAGAT
LOC_Os06g35140
Os.11085.1.S1_at--854--3131Chr06:20453435..20453459 (25 bp)
AATTTTGTTTAACCATGCTTCCAGA
LOC_Os06g35140
Target Sequence 
GTCGCAAGCGAAGCTGCCCTAGGTTCCCTGCTCGAGAGGGCAAAGACGAAAGCGACCGAGGCGATGCGCCTCGAGACGCC
GGTGAAGATGACGGCGGCGGCGGTGGCGGCGGAGGAGATCAACGGCAGGACGCCGGACTTGCAGCTGAGTTTGAGCCCGA
ACGCGGGAGATCACAGATCAGCCGGCGAGAAGAGGAAGTTCTTGAGTGAGCAGGAGGTGGACAGTGACAAGCAGCAGCTG
CCACTCACGCTTTCCCTGTCGCTCCGGGGTGGTGGCGACAATGGCGGNGGCGGCGGCGCAGAAGCCGCNGNGNAGGTTAG
AGGAAGAGATGACAGGTAGCAGCAGTAGCAAGAAGGCCGCTCTGGGGCTGAGTACTTTGGATCTGACCATGTCGATCAAG
GCATTGGAGTNAGATCTTTCAAGTACTTGTCCCAAGGCCTTCCAAGACATGCACACTGCACCATGAGATTAATTATTAAT
AAGACTGTTAATTTTGTTTAACCATGCTTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis