Browse Element(s) Details


OsAffx.15753.1.S1_at

Description tigr:9634.m03321
TID=OsAffx.15753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3513010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35080OsAffx.15751.1.S1_at11/116+20417778..20418955hypothetical protein
LOC_Os06g35090OsAffx.15752.1.S1_at11/116+20421282..20422668hypothetical protein
LOC_Os06g35100OsAffx.5017.1.S1_at11/116+20426189..20427164hypothetical protein
LOC_Os06g35110OsAffx.30226.2.S1_s_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.30226.2.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.442.1.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.12942.2.S1_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35120Os.43624.1.S1_at1/116+20431372..20434732retrotransposon protein, putative, LINE subclass
LOC_Os06g35130OsAffx.15753.1.S1_at10/116+20441593..20443070hypothetical protein
LOC_Os06g35140Os.11085.1.S1_at11/116+20453405..20456006myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15753.1.S1_at--417--5491Chr06:20442211..20442235 (25 bp)
GAACACTGTCGTAACCAAGATAGCT
LOC_Os06g35130
OsAffx.15753.1.S1_at--411--7191Chr06:20442204..20442228 (25 bp)
GTCGTAACCAAGATAGCTTCTGGAA
LOC_Os06g35130
OsAffx.15753.1.S1_at--850--2731NONE
AAGAAGGTTATCGATCGGCCGCCAT
NONE
OsAffx.15753.1.S1_at--807--51Chr06:20442097..20442121 (25 bp)
ATTAGCCAATGCAGAATTTCCAAGA
LOC_Os06g35130
OsAffx.15753.1.S1_at--546--5051Chr06:20442006..20442030 (25 bp)
GCAGCATCGGTTAATATTGCATCCA
LOC_Os06g35130
OsAffx.15753.1.S1_at--638--8131Chr06:20441895..20441919 (25 bp)
GGACATAGTGTTTTTGAGCTACCAG
LOC_Os06g35130
OsAffx.15753.1.S1_at--514--7431Chr06:20441888..20441912 (25 bp)
GTGTTTTTGAGCTACCAGAAGATTT
LOC_Os06g35130
OsAffx.15753.1.S1_at--476--5331Chr06:20441871..20441895 (25 bp)
GAAGATTTTTGGTTTGATGAGGTCA
LOC_Os06g35130
OsAffx.15753.1.S1_at--607--3031Chr06:20441828..20441852 (25 bp)
AATCCAGGGAGGTATTTTCAGCAGC
LOC_Os06g35130
OsAffx.15753.1.S1_at--1149--7851Chr06:20441818..20441842 (25 bp)
GGTATTTTCAGCAGCTATCAGACCT
LOC_Os06g35130
OsAffx.15753.1.S1_at--892--1411Chr06:20441715..20441739 (25 bp)
AGACAATTCGGCATAGGTCAGCTGC
LOC_Os06g35130
Target Sequence 
GAACACTGTCGTAACCAAGATAGCTTCTGGAAAGAAGGTTATCGATCGGCCGCCATTAGCCAATGCAGAATTTCCAAGAT
TCGAGCCGATCACTGATGATGATGGAGAAACCAGCACCACACGCCGATGTAGGTCCTTCGGAGAAGCAGCATCGGTTAAT
ATTGCATCCAAACTATCGGCTGAGCCCTTTGGAGAGTGGTTCAACAACTTCTATGATGGGTTCCCCAAGAATGCAAGAAT
CTGGTTTGCATATGAAGGACATAGTGTTTTTGAGCTACCAGAAGATTTTTGGTTTGATGAGGTCAACTCCGAAAAATATG
ACAAATCCAGGGAGGTATTTTCAGCAGCTATCAGACCTTGCATCATTCCTGTCGGCATTCATCAGGGCAAGAACATCAAG
ATGACCTATGAATTTTATCATCCAACATGTGCTGCAAGACAATTCGGCATAGGTCAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis