Browse Element(s) Details


OsAffx.15751.1.S1_at

Description tigr:9634.m03316
TID=OsAffx.15751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3508011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35040OsAffx.22848.4.S1_at2/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.4.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.3.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35050Os.18473.1.S1_at11/116+20399350..20402402prephenate dehydrogenase family protein, putative, expressed
LOC_Os06g35060OsAffx.27946.1.S1_at11/116+20403431..20404487heavy metal-associated domain containing protein, expressed
LOC_Os06g35070OsAffx.15750.1.S1_at11/116+20415539..20416236hypothetical protein
LOC_Os06g35080OsAffx.15751.1.S1_at11/116+20417778..20418955hypothetical protein
LOC_Os06g35090OsAffx.15752.1.S1_at11/116+20421282..20422668hypothetical protein
LOC_Os06g35100OsAffx.5017.1.S1_at11/116+20426189..20427164hypothetical protein
LOC_Os06g35110OsAffx.30226.2.S1_s_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.30226.2.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.442.1.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.12942.2.S1_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35120Os.43624.1.S1_at1/116+20431372..20434732retrotransposon protein, putative, LINE subclass
LOC_Os06g35130OsAffx.15753.1.S1_at10/116+20441593..20443070hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15751.1.S1_at--775--1131Chr06:20418377..20418401 (25 bp)
AGTTGGAATTGGCTCGCAGTCGATT
LOC_Os06g35080
OsAffx.15751.1.S1_at--289--2031Chr06:20418404..20418428 (25 bp)
ACTTTCGTTGACTGTATCTACCATG
LOC_Os06g35080
OsAffx.15751.1.S1_at--914--3511Chr06:20418425..20418449 (25 bp)
CATGACGGATGGTTCTACGCGGTAA
LOC_Os06g35080
OsAffx.15751.1.S1_at--900--3711Chr06:20418439..20418463 (25 bp)
CTACGCGGTAACTTCCATGGGAGTA
LOC_Os06g35080
OsAffx.15751.1.S1_at--649--7651Chr06:20418457..20418481 (25 bp)
GGGAGTAATTCATGCCTTCAATCTT
LOC_Os06g35080
OsAffx.15751.1.S1_at--1126--731Chr06:20418483..20418507 (25 bp)
ATGGGCCTTCCGTTGTGCACAAAAC
LOC_Os06g35080
OsAffx.15751.1.S1_at--919--931Chr06:20418543..20418567 (25 bp)
AGGAATACATCGTTCAGGCTCCATG
LOC_Os06g35080
OsAffx.15751.1.S1_at--119--8431Chr06:20418572..20418596 (25 bp)
GGCCTTCTTCGGATCTACAGAACAG
LOC_Os06g35080
OsAffx.15751.1.S1_at--938--2471Chr06:20418711..20418735 (25 bp)
AACACGCTCTCTTTGTTGGGCACAA
LOC_Os06g35080
OsAffx.15751.1.S1_at--123--3011Chr06:20418734..20418758 (25 bp)
AATGCTTCGGTTTGCCTTTCTGTTA
LOC_Os06g35080
OsAffx.15751.1.S1_at--515--10311Chr06:20418750..20418774 (25 bp)
TTTCTGTTAAGGACCATCCCACTTT
LOC_Os06g35080
Target Sequence 
AGTTGGAATTGGCTCGCAGTCGATTATACTTTCGTTGACTGTATCTACCATGACGGATGGTTCTACGCGGTAACTTCCAT
GGGAGTAATTCATGCCTTCAATCTTCATGGGCCTTCCGTTGTGCACAAAACAATCTTTCCGAGGATCCAAGACAATAATA
TGCACCAGGAATACATCGTTCAGGCTCCATGGGGGGGCCTTCTTCGGATCTACAGAACAGTAGACATCCTTGAAAAAGAG
CAACGACACAACCAAGTAGTTCGTACATTGGGGTTCAGAGTGTACAGGGTCAGTTTGGATGAGCAGAAGCTTGTGAGGAT
GACAGGAATTGGTGAACACGCTCTCTTTGTTGGGCACAATGCTTCGGTTTGCCTTTCTGTTAAGGACCATCCCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis