Browse Element(s) Details


OsAffx.27946.1.S1_at

Description tigr:9634.m03314
TID=OsAffx.27946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Heavy-metal-associated domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3506011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35030Os.10920.2.A1_a_at11/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35030Os.57178.1.S1_at10/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35040OsAffx.22848.4.S1_at2/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.4.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.3.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35050Os.18473.1.S1_at11/116+20399350..20402402prephenate dehydrogenase family protein, putative, expressed
LOC_Os06g35060OsAffx.27946.1.S1_at11/116+20403431..20404487heavy metal-associated domain containing protein, expressed
LOC_Os06g35070OsAffx.15750.1.S1_at11/116+20415539..20416236hypothetical protein
LOC_Os06g35080OsAffx.15751.1.S1_at11/116+20417778..20418955hypothetical protein
LOC_Os06g35090OsAffx.15752.1.S1_at11/116+20421282..20422668hypothetical protein
LOC_Os06g35100OsAffx.5017.1.S1_at11/116+20426189..20427164hypothetical protein
LOC_Os06g35110OsAffx.30226.2.S1_s_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.30226.2.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.442.1.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.12942.2.S1_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27946.1.S1_at--983--4132Chr01:38334267..38334656 (25 bp)
CGCTCCGGGAGGATCGCCGTGCTCT
NONE
OsAffx.27946.1.S1_at--833--2471Chr06:20403769..20403793 (25 bp)
AACACTACAGCAGCGTGCAGCACGG
LOC_Os06g35060
OsAffx.27946.1.S1_at--923--3191Chr06:20403726..20403750 (25 bp)
CAAGGCGGTGAGCTCGTACAACTAC
LOC_Os06g35060
OsAffx.27946.1.S1_at--379--7031Chr06:20403711..20403735 (25 bp)
GTACAACTACCACGTCCACGGATAC
LOC_Os06g35060
OsAffx.27946.1.S1_at--34--1911Chr06:20403700..20403724 (25 bp)
ACGTCCACGGATACTTCGACTCCGA
LOC_Os06g35060
OsAffx.27946.1.S1_at--148--4531Chr06:20403626..20403650 (25 bp)
GCCGCGCGGAGCTACTTCAGCGACG
LOC_Os06g35060
OsAffx.27946.1.S1_at--1084--7171Chr06:20403553..20403577 (25 bp)
GTCGGCCGGAAGAACGCTGCTCTGC
LOC_Os06g35060
OsAffx.27946.1.S1_at--466--4491Chr06:20403549..20403573 (25 bp)
GCCGGAAGAACGCTGCTCTGCTCTG
LOC_Os06g35060
OsAffx.27946.1.S1_at--679--3891Chr06:20403515..20403539 (25 bp)
CTGTGTTCTTGTGTGGCTTTGTGCA
LOC_Os06g35060
OsAffx.27946.1.S1_at--611--7011Chr06:20403476..20403500 (25 bp)
GTACTTGTGTACAGTTTCAGACTTT
LOC_Os06g35060
OsAffx.27946.1.S1_at--268--10531Chr06:20403461..20403485 (25 bp)
TTCAGACTTTCAGCCTTTCAGAGAT
LOC_Os06g35060
Target Sequence 
CGCTCCGGGAGGATCGCCGTGCTCTGGCCGTCGGCGTACGACACCGACCACCGCCACCACCACCAAGCCTACTACGCGCA
GCCGGCGTACCATCACCACCACCACTACCAACAAACCATCAAGCCCGCCGCCGCCGCCGCCGCCGCCGTCGCCGTCGCCG
CGCGCGCGCCCCACCACCACCACCAACACTACAGCAGCGTGCAGCACGGCAGGATGAGCGGAGGAGGCAAGGCGGTGAGC
TCGTACAACTACCACGTCCACGGATACTTCGACTCCGACCTCCACGGGTACAGCGGCGGCCACCACCACGGCGACGTCGT
GCCGGCCGCCGCGCGGAGCTACTTCAGCGACGAGAACCCGCACGCCTGCGCCGTCATGTGACCGTCGCCGTCGCCGGCCG
GTCGGCCGGAAGAACGCTGCTCTGCTCTGCATGCTCCTCTGTGTTCTTGTGTGGCTTTGTGCAGTTGTTGTTGTTGTGTA
CTTGTGTACAGTTTCAGACTTTCAGCCTTTCAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis