Browse Element(s) Details


Os.10920.2.A1_a_at

Description gb:CB681496
DB_XREF= gi:29685221
DB_XREF=OSJNEf07M22.r
CLONE=OSJNEf07M22
TID=Os.10920.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10920 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_175769.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3503011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34990OsAffx.15749.1.S1_at11/116+20348103..20348567Cytochrome P450 71A26, putative
LOC_Os06g35000Os.47004.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35000Os.51990.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35010OsAffx.5015.1.S1_at11/116+20359901..20361245hypothetical protein
LOC_Os06g35020OsAffx.5016.1.S1_at9/116+20364074..20369998hypothetical protein
LOC_Os06g35030Os.10920.2.A1_a_at11/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35030Os.57178.1.S1_at10/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35040OsAffx.22848.4.S1_at2/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.4.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.3.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35050Os.18473.1.S1_at11/116+20399350..20402402prephenate dehydrogenase family protein, putative, expressed
LOC_Os06g35060OsAffx.27946.1.S1_at11/116+20403431..20404487heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10920.2.A1_a_at--373--3531Chr06:20378521..20378545 (25 bp)
CATGCATCGCGTTTGTTGAGTTTGT
LOC_Os06g35030
Os.10920.2.A1_a_at--1018--1391Chr06:20379753..20379777 (25 bp)
AGACTCTGCTATTCTTGCTCTGAGT
LOC_Os06g35030
Os.10920.2.A1_a_at--810--9471Chr06:20379771..20379795 (25 bp)
TCTGAGTTGCAGTGGCATGGTCCTT
LOC_Os06g35030
Os.10920.2.A1_a_at--563--7471Chr06:20379956..20379980 (25 bp)
GTGTGACGTCGCACTGAAACCCGGC
LOC_Os06g35030
Os.10920.2.A1_a_at--725--8651Chr06:20380030..20380054 (25 bp)
TGTGTGGCCTTAGAGACCGTCTGTC
LOC_Os06g35030
Os.10920.2.A1_a_at--946--7231Chr06:20380052..20380076 (25 bp)
GTCGCGTCGCGGATCAGTAATTGTC
LOC_Os06g35030
Os.10920.2.A1_a_at--167--7171Chr06:20380074..20380098 (25 bp)
GTCGTCGAAGAGAGTTTGTCCTTTT
LOC_Os06g35030
Os.10920.2.A1_a_at--928--7251Chr06:20380091..20380115 (25 bp)
GTCCTTTTGGTTATTCTACTAGTCT
LOC_Os06g35030
Os.10920.2.A1_a_at--332--3571Chr06:20380133..20380157 (25 bp)
CATACCGCGCTGATGTGTTCTTGGA
LOC_Os06g35030
Os.10920.2.A1_a_at--717--5851Chr06:20380167..20380191 (25 bp)
GACCAATCTGTATGTTCTCCGGGAG
LOC_Os06g35030
Os.10920.2.A1_a_at--38--531Chr06:20380264..20380288 (25 bp)
ATCGATGGATGCTGTAGCGGCCTTT
LOC_Os06g35030
Target Sequence 
CATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCG
CTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCT
CTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGG
ATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCT
GATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTG
CCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10920.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis