Browse Element(s) Details


OsAffx.5016.1.S1_at

Description tigr:9634.m03310
TID=OsAffx.5016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g350209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34980NANA6+20345077..20347635Transposable element protein, putative, Retrotrans_gag
LOC_Os06g34990OsAffx.15749.1.S1_at11/116+20348103..20348567Cytochrome P450 71A26, putative
LOC_Os06g35000Os.47004.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35000Os.51990.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35010OsAffx.5015.1.S1_at11/116+20359901..20361245hypothetical protein
LOC_Os06g35020OsAffx.5016.1.S1_at9/116+20364074..20369998hypothetical protein
LOC_Os06g35030Os.10920.2.A1_a_at11/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35030Os.57178.1.S1_at10/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35040OsAffx.22848.4.S1_at2/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.4.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.3.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5016.1.S1_at--191--9791Chr06:20364344..20364368 (25 bp)
TAAGATGTGGTGGTTCCCATGCTCT
LOC_Os06g35020
OsAffx.5016.1.S1_at--680--8011NONE
GGAGGACACAGTTGAGCATCTCATT
NONE
OsAffx.5016.1.S1_at--802--10131Chr06:20367888..20367912 (25 bp)
TATGCGAGGAGCCAACTGATATCAA
LOC_Os06g35020
OsAffx.5016.1.S1_at--590--3191Chr06:20367910..20367934 (25 bp)
CAATCCATCAGGTTTCGCAGTGTTA
LOC_Os06g35020
OsAffx.5016.1.S1_at--616--7991Chr06:20368841..20368865 (25 bp)
GGATGACCAATCCTGGAGTACATTT
LOC_Os06g35020
OsAffx.5016.1.S1_at--732--10131Chr06:20368887..20368911 (25 bp)
TATCCTTTTATCCTTTCTGGAGGTT
LOC_Os06g35020
OsAffx.5016.1.S1_at--337--6891Chr06:20368915..20368939 (25 bp)
GTATCTTATGGACAGTTGGCTTTCA
LOC_Os06g35020
OsAffx.5016.1.S1_at--278--10871NONE
TTGGCTTTCAGCTCTGGATTCTTCA
NONE
OsAffx.5016.1.S1_at--1104--6551Chr06:20369714..20369738 (25 bp)
GATTCTTCAGTTTGGTCTACTGGGA
LOC_Os06g35020
OsAffx.5016.1.S1_at--590--9051Chr06:20369759..20369783 (25 bp)
TGCAGGGCAACCATATCACCGTGGG
LOC_Os06g35020
OsAffx.5016.1.S1_at--603--3431Chr06:20369938..20369962 (25 bp)
CAGAGGCATTGACATTGACCAGGAA
LOC_Os06g35020
Target Sequence 
TAAGATGTGGTGGTTCCCATGCTCTTATTGGGATCAGGGGTCCAAGGGAGGACACAGTTGAGCATCTCATTATGGTAACC
ATGAAAAGAGTAATGGACCTTAATGGTCTGGAGTCTGGACATATGCAGCAGAAAAATATGAATAGGGAAGGGCAGAAGAG
GGAGGGAGAGTTCACTTTGAGGGAGATGACTGGTGGACTTTGTAAAACCTGTTTGAGTGGTGATATTGAGGTATTGAGTG
GTACAATATATATAATATATCCAATATGCGAGGAGCCAACTGATATCAATCCATCAGGTTTCGCAGTGTTAGAACATTGG
ATGACCAATCCTGGAGTACATTTTGTTTTAAAAATTTCACAGTATATCCTTTTATCCTTTCTGGAGGTTACAGTATCTTA
TGGACAGTTGGCTTTCAGCTCTGGATTCTTCAGTTTGGTCTACTGGGATCATGATGGTGATGATATCCTGCAGGGCAACC
ATATCACCGTGGGGCAGCGCAGAAAGAAAGAAACAGGTAGAAAGGTCAGAGGCATTGACATTGACCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis