Browse Element(s) Details


OsAffx.15749.1.S1_at

Description tigr:9634.m03307
TID=OsAffx.15749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3499011/11Cytochrome P450 71A26, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34950OsAffx.27945.1.S1_at7/116+20322526..20323937hypothetical protein
LOC_Os06g34950Os.57368.1.S1_at3/116+20322526..20323937hypothetical protein
LOC_Os06g34960OsAffx.15747.1.S1_at10/116+20325285..20333177Protein kinase domain containing protein, expressed
LOC_Os06g34970OsAffx.15748.1.S1_at11/116+20336991..20337407hypothetical protein
LOC_Os06g34980NANA6+20345077..20347635Transposable element protein, putative, Retrotrans_gag
LOC_Os06g34990OsAffx.15749.1.S1_at11/116+20348103..20348567Cytochrome P450 71A26, putative
LOC_Os06g35000Os.47004.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35000Os.51990.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35010OsAffx.5015.1.S1_at11/116+20359901..20361245hypothetical protein
LOC_Os06g35020OsAffx.5016.1.S1_at9/116+20364074..20369998hypothetical protein
LOC_Os06g35030Os.10920.2.A1_a_at11/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35030Os.57178.1.S1_at10/116+20372826..20380401RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15749.1.S1_at--270--3811Chr06:20348417..20348441 (25 bp)
CTCCTGTACGGCTGCACCGACATTG
LOC_Os06g34990
OsAffx.15749.1.S1_at--40--5691Chr06:20348399..20348423 (25 bp)
GACATTGCCTTTGCGCCACATGGTG
LOC_Os06g34990
OsAffx.15749.1.S1_at--851--10271Chr06:20348390..20348414 (25 bp)
TTTGCGCCACATGGTGCGTACTGGC
LOC_Os06g34990
OsAffx.15749.1.S1_at--934--8311Chr06:20348233..20348257 (25 bp)
GGCTCAGCGAGCTACTGAGCGCGTT
LOC_Os06g34990
OsAffx.15749.1.S1_at--536--9911Chr06:20348221..20348245 (25 bp)
TACTGAGCGCGTTCGCCAAGGACGT
LOC_Os06g34990
OsAffx.15749.1.S1_at--434--4571Chr06:20348215..20348239 (25 bp)
GCGCGTTCGCCAAGGACGTTGCCGT
LOC_Os06g34990
OsAffx.15749.1.S1_at--931--10691Chr06:20348197..20348221 (25 bp)
TTGCCGTGCGGAATGTGCTGGGTAT
LOC_Os06g34990
OsAffx.15749.1.S1_at--368--6891Chr06:20348176..20348200 (25 bp)
GTATACGTGGCGGTGATCTTACCTC
LOC_Os06g34990
OsAffx.15749.1.S1_at--869--7751Chr06:20348165..20348189 (25 bp)
GGTGATCTTACCTCGAGTGTCCTCG
LOC_Os06g34990
OsAffx.15749.1.S1_at--185--1111Chr06:20348150..20348174 (25 bp)
AGTGTCCTCGGTGGCCTTCATTCAT
LOC_Os06g34990
OsAffx.15749.1.S1_at--494--4451Chr06:20348137..20348161 (25 bp)
GCCTTCATTCATGTCTCGATCTGAA
LOC_Os06g34990
Target Sequence 
CTCCTGTACGGCTGCACCGACATTGCCTTTGCGCCACATGGTGCGTACTGGCGCGCCGCACGCAGGGCGAGCGTGCTCCA
CCTGCTCGGCCCGGCCAGGGTCCGGGGCTACCGCGCCGTGCGGGAGGAGGAGGTAGGGGAGCTCCTCCAGCTAGTGGAGG
TGGCGGCGAGCGGTGGCGTCATGCGGCTCAGCGAGCTACTGAGCGCGTTCGCCAAGGACGTTGCCGTGCGGAATGTGCTG
GGTATACGTGGCGGTGATCTTACCTCGAGTGTCCTCGGTGGCCTTCATTCATGTCTCGATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis