Browse Element(s) Details


OsAffx.5015.1.S1_at

Description tigr:9634.m03309
TID=OsAffx.5015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3501011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34970OsAffx.15748.1.S1_at11/116+20336991..20337407hypothetical protein
LOC_Os06g34980NANA6+20345077..20347635Transposable element protein, putative, Retrotrans_gag
LOC_Os06g34990OsAffx.15749.1.S1_at11/116+20348103..20348567Cytochrome P450 71A26, putative
LOC_Os06g35000Os.47004.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35000Os.51990.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35010OsAffx.5015.1.S1_at11/116+20359901..20361245hypothetical protein
LOC_Os06g35020OsAffx.5016.1.S1_at9/116+20364074..20369998hypothetical protein
LOC_Os06g35030Os.10920.2.A1_a_at11/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35030Os.57178.1.S1_at10/116+20372826..20380401RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5015.1.S1_at--10--9971Chr06:20360879..20361087 (25 bp)
TACCCCTGTTATTGACGGCCAATCA
LOC_Os06g35010
OsAffx.5015.1.S1_at--923--5271Chr06:20360843..20360867 (25 bp)
GAATGGATCCTTTTGGCCTACAATG
LOC_Os06g35010
OsAffx.5015.1.S1_at--1091--7271Chr06:20360345..20360804 (25 bp)
GTGCCAGAAGCATACCTCCAAGAAC
LOC_Os06g35010
OsAffx.5015.1.S1_at--414--5211Chr06:20360228..20360252 (25 bp)
GAATATTCCGCAGAAAGCCGTCAAT
LOC_Os06g35010
OsAffx.5015.1.S1_at--440--9792Chr07:6578423..6578447 (25 bp)
TAAGCTACCTGATGCTCTTTGGGCA
NONE
OsAffx.5015.1.S1_at--747--6951Chr06:20360155..20360179 (25 bp)
GTAGAACCGCATACAAGACGTCCAT
LOC_Os06g35010
OsAffx.5015.1.S1_at--60--5291Chr06:20360128..20360152 (25 bp)
GAATGTCACCATACTAGCTTGTCTA
LOC_Os06g35010
OsAffx.5015.1.S1_at--142--10131Chr06:20360105..20360129 (25 bp)
TATGAAAAGACTTGCCACCTGCCTG
LOC_Os06g35010
OsAffx.5015.1.S1_at--628--10751Chr06:20360080..20360104 (25 bp)
TTGAGCTGGAACATAGGGCGCACTG
LOC_Os06g35010
OsAffx.5015.1.S1_at--1087--5091Chr06:20360061..20360085 (25 bp)
GCACTGGGCCATCCGGACTTAGAAT
LOC_Os06g35010
OsAffx.5015.1.S1_at--988--8111Chr06:20360018..20360042 (25 bp)
GGACGGCACCAACATATGCACCTGT
LOC_Os06g35010
Target Sequence 
TACCCCTGTTATTGACGGCCAATCAAAGATCTGGCAGAATGGATCCTTTTGGCCTACAATGTATGAAGATACAAAAGAAT
TCATTCAAAGATGTGCAAGGTGCCAGAAGCATACCTCCAAGAACTTCTTACAAGAGCTTGGAGCACAACACAACATTGCA
ACTCCATACCGCCCCCAAACAGGTGGTAAAGTAGAAACATACAATAAGCAAATCAAGAATATTCCGCAGAAAGCCGTCAA
TGAGAGGGGAAAACATGGAAGCATAAGCTACCTGATGCTCTTTGGGCATGTAGAACCGCATACAAGACGTCCATCGGAAT
GTCACCATACTAGCTTGTCTATGAAAAGACTTGCCACCTGCCTGTTGAGCTGGAACATAGGGCGCACTGGGCCATCCGGA
CTTAGAATATGGATTTGGGACAAGTCGGACGGCACCAACATATGCACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis