Browse Element(s) Details


OsAffx.15752.1.S1_at

Description tigr:9634.m03317
TID=OsAffx.15752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3509011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35050Os.18473.1.S1_at11/116+20399350..20402402prephenate dehydrogenase family protein, putative, expressed
LOC_Os06g35060OsAffx.27946.1.S1_at11/116+20403431..20404487heavy metal-associated domain containing protein, expressed
LOC_Os06g35070OsAffx.15750.1.S1_at11/116+20415539..20416236hypothetical protein
LOC_Os06g35080OsAffx.15751.1.S1_at11/116+20417778..20418955hypothetical protein
LOC_Os06g35090OsAffx.15752.1.S1_at11/116+20421282..20422668hypothetical protein
LOC_Os06g35100OsAffx.5017.1.S1_at11/116+20426189..20427164hypothetical protein
LOC_Os06g35110OsAffx.30226.2.S1_s_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.30226.2.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.442.1.S1_x_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35110OsAffx.12942.2.S1_at1/116+20427842..20431178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35120Os.43624.1.S1_at1/116+20431372..20434732retrotransposon protein, putative, LINE subclass
LOC_Os06g35130OsAffx.15753.1.S1_at10/116+20441593..20443070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15752.1.S1_at--330--7971Chr06:20422353..20422377 (25 bp)
GGATGGTTTTACACCGTCAGTGTTT
LOC_Os06g35090
OsAffx.15752.1.S1_at--4--5291Chr06:20422303..20422327 (25 bp)
GAATGGGCCATCTGTCGTACACAAA
LOC_Os06g35090
OsAffx.15752.1.S1_at--750--6311Chr06:20422192..20422216 (25 bp)
GATGACAATAATTCCGCGCAATGGG
LOC_Os06g35090
OsAffx.15752.1.S1_at--202--7411Chr06:20422070..20422094 (25 bp)
GTGATTATGCGCTGTTTATTGGGCA
LOC_Os06g35090
OsAffx.15752.1.S1_at--517--10231Chr06:20422054..20422078 (25 bp)
TATTGGGCATAATACTTCCTCCTGC
LOC_Os06g35090
OsAffx.15752.1.S1_at--629--2911Chr06:20422020..20422044 (25 bp)
AAGGATTGCCATATGTTGATGCCAA
LOC_Os06g35090
OsAffx.15752.1.S1_at--579--1791Chr06:20421981..20422005 (25 bp)
ACCGACGATGAGTATCTATGGCTAC
LOC_Os06g35090
OsAffx.15752.1.S1_at--22--3771Chr06:20421902..20421926 (25 bp)
CTCTATCAAATGTGGTTAGCCCTGA
LOC_Os06g35090
OsAffx.15752.1.S1_at--1076--9971Chr06:20421886..20421910 (25 bp)
TAGCCCTGAACCTTGGAAAAGTTGG
LOC_Os06g35090
OsAffx.15752.1.S1_at--17--5531Chr06:20421871..20421895 (25 bp)
GAAAAGTTGGTTGCCTCCTATATGG
LOC_Os06g35090
OsAffx.15752.1.S1_at--628--4471Chr06:20421859..20421883 (25 bp)
GCCTCCTATATGGATGATGCCCAAT
LOC_Os06g35090
Target Sequence 
GGATGGTTTTACACCGTCAGTGTTTTAGGAGCAGTGGATGCCTTCAATCTGAATGGGCCATCTGTCGTACACAAAAGAAT
TCTTAAAGATATGCTAACACTAGGGTATGAACAGATGTATATAGTTCAATCTCCATGGGGCGATATCCTAATAGTAAACA
GGATGACAATAATTCCGCGCAATGGGAATCCTGAAATAGAAGAAACAGAGCTATATACATCTGACATTGTAGTATACAAG
GCTGATATTGGTGAACAGAAGCTTGTCAAACTGACAGGCATAGGTGATTATGCGCTGTTTATTGGGCATAATACTTCCTC
CTGCCTTCCTGTGAAGGATTGCCATATGTTGATGCCAAATCATGTCTATATTACCGACGATGAGTATCTATGGCTACTTG
AGTTTAGACATAAGCGACGGGATGTTGGAATTTACAGCTTGGAAAATAACTCTCTATCAAATGTGGTTAGCCCTGAACCT
TGGAAAAGTTGGTTGCCTCCTATATGGATGATGCCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis