Browse Element(s) Details


Os.11087.1.A1_at

Description gb:AK071369.1
DB_XREF= gi:32981392
TID=Os.11087.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023096L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096L07, full insert sequence.
FL= gb:AK071369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4519011/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11087.1.A1_at--66--5931Chr04:26493870..26493894 (25 bp)
GAGCTTGTCTAGTTCTGTTTCGTTA
LOC_Os04g45190
Os.11087.1.A1_at--556--1791Chr04:26493775..26493799 (25 bp)
ACCGCAGTCCGCATAGCAAATTCAT
LOC_Os04g45190
Os.11087.1.A1_at--486--9251Chr04:26493751..26493775 (25 bp)
TCCTAGGATCTGGTATATTCTGTAA
LOC_Os04g45190
Os.11087.1.A1_at--266--9751Chr04:26493729..26493753 (25 bp)
TAATTGCGTGCTTCAGATTGGCTGG
LOC_Os04g45190
Os.11087.1.A1_at--1036--11Chr04:26493713..26493737 (25 bp)
ATTGGCTGGCTACCATACACAGTCA
LOC_Os04g45190
Os.11087.1.A1_at--833--3171Chr04:26493690..26493714 (25 bp)
CAATAACTCATCTCCTTAACACTAA
LOC_Os04g45190
Os.11087.1.A1_at--70--9791Chr04:26493668..26493692 (25 bp)
TAAGTTGCAAGTTAGTCGCGAGCTT
LOC_Os04g45190
Os.11087.1.A1_at--99--10291Chr04:26493620..26493644 (25 bp)
TTTGCGCATCGGTATCTGTTGGTAC
LOC_Os04g45190
Os.11087.1.A1_at--75--10491Chr04:26493574..26493598 (25 bp)
TTACTAGTGTCCTGATTGCCTGATT
LOC_Os04g45190
Os.11087.1.A1_at--53--6491Chr04:26493547..26493571 (25 bp)
GATACGTTTGTCCTATGTATTGCAA
LOC_Os04g45190
Os.11087.1.A1_at--859--731Chr04:26493505..26493529 (25 bp)
ATGTTCAGTTATGTTTCGGAGCAAA
LOC_Os04g45190
Target Sequence 
GAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCNTGATGCGTTTGC
TCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGAT
TGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATG
CAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATTGCCTGA
TTNTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11087.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis