Browse Element(s) Details


Os.11100.1.S1_at

Description gb:AK072440.1
DB_XREF= gi:32982463
TID=Os.11100.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11100 (NCBI UniGene Cluster)
UG_TITLE=Clone ST1 sucrose-regulated mRNA, 3-end sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108D18, full insert sequence.
FL= gb:AK072440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3484011/11RNA polymerase II transcriptional coactivator KIWI, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34790OsAffx.12351.2.S1_at11/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34790OsAffx.12352.1.S1_at1/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34800OsAffx.12353.1.S1_at11/112+20858661..20859470Leucine Rich Repeat family protein
LOC_Os02g34810Os.26815.1.S1_at11/112+20862392..20866211L-ascorbate peroxidase 8, chloroplast precursor, putative, expressed
LOC_Os02g34820NANA2+20867867..20868103hypothetical protein
LOC_Os02g34830NANA2+20872114..20876938TPR Domain containing protein, expressed
LOC_Os02g34840Os.11100.1.S1_at11/112+20878409..20880621RNA polymerase II transcriptional coactivator KIWI, putative, expressed
LOC_Os02g34850Os.31904.1.S1_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850OsAffx.24579.1.S1_x_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850Os.52033.1.S1_at10/112+20894008..20904607CW-type Zinc Finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006952biological_processdefense response
GO:0003677molecular_functionDNA binding
GO:0003713molecular_functiontranscription coactivator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11100.1.S1_at--474--511Chr02:20878593..20878726 (25 bp)
ATCGTCGTCGCCCAGATATCGAAGA
LOC_Os02g34840
Os.11100.1.S1_at--1145--9351Chr02:20878769..20878793 (25 bp)
TCGACATCCGCGAGTTCTACGAGAA
LOC_Os02g34840
Os.11100.1.S1_at--533--2311Chr02:20879778..20879800 (23 bp)
AAAGGTATACAGCTCCCGATGGATC
LOC_Os02g34840
Os.11100.1.S1_at--1059--8051Chr02:20880296..20880320 (25 bp)
GGAGAATGCGTGATCGGAGCCCATT
LOC_Os02g34840
Os.11100.1.S1_at--339--8091Chr02:20880311..20880335 (25 bp)
GGAGCCCATTCTCTTGTGATGCAAG
LOC_Os02g34840
Os.11100.1.S1_at--773--7151Chr02:20880350..20880374 (25 bp)
GTCTGTCTTTTATGACTCCGAGGAA
LOC_Os02g34840
Os.11100.1.S1_at--777--6811Chr02:20880430..20880454 (25 bp)
GTTTTAGTTTGGTCATGCGCGGAAA
LOC_Os02g34840
Os.11100.1.S1_at--971--2971Chr02:20880454..20880478 (25 bp)
AATGTGGCCTTGTCTGGTATTGTGC
LOC_Os02g34840
Os.11100.1.S1_at--291--5071Chr02:20880486..20880510 (25 bp)
GCAGCTATGTGCCTAATGTGCTCTC
LOC_Os02g34840
Os.11100.1.S1_at--794--3771Chr02:20880506..20880530 (25 bp)
CTCTCCTCATTTTGTACGTTGGGTA
LOC_Os02g34840
Os.11100.1.S1_at--707--7871Chr02:20880558..20880582 (25 bp)
GGTTTCTGCGTGTACTTATGTTTTA
LOC_Os02g34840
Target Sequence 
ATCGTCGTCGCCCAGATATCGAAGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATCCGCGA
GTTCTACGAGAAGGACGGCAAGACCCTCCCCGGCCGCAAAGGTATACAGCTCCCGATGGATCAGTGGAAGATACTGAGGG
ACAATATCAAAGCTATAGATGAGGCCATCAAGGAGAATGCGTGATCGGAGCCCATTCTCTTGTGATGCAAGTAGACTAAG
CCTNCGTCTGTCTTTTATGACTCCGAGGAATATTGCACTTTTGGTATGGTAATCTTCANTACCCTGTCTAGTAATATCAA
GTAATGTTTTAGTTTGGTCATGCGCGGAAAATGTGGCCTTGTCTGGTATTGTGCCAAAGAAGCAGCTATGTGCCTAATGT
GCTCTCCTCATTTTGTACGTTGGGTAAGGAGGTCCATCTGTTAATGGTTGGTTGGTTTCTGCGTGTACTTATGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis