Browse Element(s) Details


OsAffx.12352.1.S1_at

Description tigr:9630.m03313
TID=OsAffx.12352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC116601 Putative disease resistance protein Hcr2-0B
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3477011/11Leucine Rich Repeat family protein
LOC_Os02g347901/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34719NANA2+20823053..20823213NA
LOC_Os02g34730NANA2+20826945..20829550transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g34740NANA2+20830524..20832383retrotransposon protein, putative, unclassified
LOC_Os02g34750OsAffx.12351.1.S1_at11/112+20836531..20840346Protein kinase domain containing protein, expressed
LOC_Os02g34760Os.35216.1.S1_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34760Os.35216.2.S1_x_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34770OsAffx.12352.1.S1_at11/112+20843795..20845282Leucine Rich Repeat family protein
LOC_Os02g34780OsAffx.24577.1.S1_at11/112+20846984..20847190hypothetical protein
LOC_Os02g34790OsAffx.12351.2.S1_at11/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34790OsAffx.12352.1.S1_at1/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34800OsAffx.12353.1.S1_at11/112+20858661..20859470Leucine Rich Repeat family protein
LOC_Os02g34810Os.26815.1.S1_at11/112+20862392..20866211L-ascorbate peroxidase 8, chloroplast precursor, putative, expressed
LOC_Os02g34820NANA2+20867867..20868103hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12352.1.S1_at--51--10292Chr02:20854591..20854615 (25 bp)
TTCCGGGCACATTCCAAACAACTTA
LOC_Os02g34790
OsAffx.12352.1.S1_at--603--3111Chr02:20844484..20844508 (25 bp)
AATTTGACTAAACTCTCGCTCTTGG
LOC_Os02g34770
OsAffx.12352.1.S1_at--169--9511Chr02:20844471..20844495 (25 bp)
TCTCGCTCTTGGATCTTTGTCACAA
LOC_Os02g34770
OsAffx.12352.1.S1_at--412--7091Chr02:20844453..20844477 (25 bp)
GTCACAACCAACTTTCTGAGCACAT
LOC_Os02g34770
OsAffx.12352.1.S1_at--547--1091Chr02:20844396..20844420 (25 bp)
AGGGCCTAAGGCTTTGTGACAACAT
LOC_Os02g34770
OsAffx.12352.1.S1_at--173--7371Chr02:20844381..20844405 (25 bp)
GTGACAACATGCTCTCAAGTTCCAT
LOC_Os02g34770
OsAffx.12352.1.S1_at--730--2391Chr02:20844331..20844355 (25 bp)
AAACTCACTGTCTTATCACTTTATA
LOC_Os02g34770
OsAffx.12352.1.S1_at--939--2512Chr02:20844085..20844105 (21 bp)
AACTTCACAGGTTCCATTCCAAACT
LOC_Os02g34770
OsAffx.12352.1.S1_at--731--2391Chr02:20844043..20844067 (25 bp)
AAACTCACTGACTTAGCACTTTTTG
LOC_Os02g34770
OsAffx.12352.1.S1_at--241--3191Chr02:20844013..20844037 (25 bp)
CAATTTTCTGGTCATATTTCTCAAG
LOC_Os02g34770
OsAffx.12352.1.S1_at--481--5711Chr02:20843903..20843927 (25 bp)
GACTAAACTCATTGACTTGTCACTT
LOC_Os02g34770
Target Sequence 
TTCCGGGCACATTCCAAACAACTTAGGGAATTTGACTAAACTCTCGCTCTTGGATCTTTGTCACAACCAACTTTCTGAGC
ACATTCCTCAAGAACTAGGTTACCTGGTGAACTTAAAGGGCCTAAGGCTTTGTGACAACATGCTCTCAAGTTCCATTCCA
AACAACTTAGAGAATTTGACTAAACTCACTGTCTTATCACTTTATAAAAACCAACTTTCTGGACACATTCCTCAAGAACT
AGGTTACCTTGTGAACTTAAAGAACTTATCGCTTTATTCAAACAACTTCACAGGTTCCATTCCAAACTGCTTAGGGAATT
TGACTAAACTCACTGACTTAGCACTTTTTGAAAACCAATTTTCTGGTCATATTTCTCAAGAACTAGGTAAGCTAGTGAAT
TTAGAGAATTTAGAACTTTTCAAAAACATGCTCACAGGTTCTATTCCAAACAACTTAGGGAATTTGACTAAACTCATTGA
CTTGTCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis