Browse Element(s) Details


OsAffx.24577.1.S1_at

Description tigr:9630.m03314
TID=OsAffx.24577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3478011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34719NANA2+20823053..20823213NA
LOC_Os02g34730NANA2+20826945..20829550transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g34740NANA2+20830524..20832383retrotransposon protein, putative, unclassified
LOC_Os02g34750OsAffx.12351.1.S1_at11/112+20836531..20840346Protein kinase domain containing protein, expressed
LOC_Os02g34760Os.35216.1.S1_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34760Os.35216.2.S1_x_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34770OsAffx.12352.1.S1_at11/112+20843795..20845282Leucine Rich Repeat family protein
LOC_Os02g34780OsAffx.24577.1.S1_at11/112+20846984..20847190hypothetical protein
LOC_Os02g34790OsAffx.12351.2.S1_at11/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34790OsAffx.12352.1.S1_at1/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34800OsAffx.12353.1.S1_at11/112+20858661..20859470Leucine Rich Repeat family protein
LOC_Os02g34810Os.26815.1.S1_at11/112+20862392..20866211L-ascorbate peroxidase 8, chloroplast precursor, putative, expressed
LOC_Os02g34820NANA2+20867867..20868103hypothetical protein
LOC_Os02g34830NANA2+20872114..20876938TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24577.1.S1_at--1135--4491Chr02:20847135..20847159 (25 bp)
GCCGTTGCCTTCTTGCCTGTGGACG
LOC_Os02g34780
OsAffx.24577.1.S1_at--760--10691Chr02:20847131..20847155 (25 bp)
TTGCCTTCTTGCCTGTGGACGCTGC
LOC_Os02g34780
OsAffx.24577.1.S1_at--398--8531Chr02:20847116..20847140 (25 bp)
TGGACGCTGCGCTGTTCGTGTCACC
LOC_Os02g34780
OsAffx.24577.1.S1_at--863--9151Chr02:20847109..20847133 (25 bp)
TGCGCTGTTCGTGTCACCGAGGTGA
LOC_Os02g34780
OsAffx.24577.1.S1_at--801--4131Chr02:20847107..20847131 (25 bp)
CGCTGTTCGTGTCACCGAGGTGACA
LOC_Os02g34780
OsAffx.24577.1.S1_at--1123--9671Chr02:20847096..20847120 (25 bp)
TCACCGAGGTGACAGCTCGACCAGA
LOC_Os02g34780
OsAffx.24577.1.S1_at--241--1051Chr02:20847090..20847114 (25 bp)
AGGTGACAGCTCGACCAGAGGGCAT
LOC_Os02g34780
OsAffx.24577.1.S1_at--281--5651Chr02:20847086..20847110 (25 bp)
GACAGCTCGACCAGAGGGCATGGTT
LOC_Os02g34780
OsAffx.24577.1.S1_at--101--1591Chr02:20847083..20847107 (25 bp)
AGCTCGACCAGAGGGCATGGTTACG
LOC_Os02g34780
OsAffx.24577.1.S1_at--568--1711Chr02:20847077..20847101 (25 bp)
ACCAGAGGGCATGGTTACGGTCGAT
LOC_Os02g34780
OsAffx.24577.1.S1_at--109--9891Chr02:20847062..20847086 (25 bp)
TACGGTCGATGCAGTGGGAAGAACA
LOC_Os02g34780
Target Sequence 
GCCGTTGCCTTCTTGCCTGTGGACGCTGCGCTGTTCGTGTCACCGAGGTGACAGCTCGACCAGAGGGCATGGTTACGGTC
GATGCAGTGGGAAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis