Browse Element(s) Details


OsAffx.12353.1.S1_at

Description tigr:9630.m03317
TID=OsAffx.12353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3480011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34750OsAffx.12351.1.S1_at11/112+20836531..20840346Protein kinase domain containing protein, expressed
LOC_Os02g34760Os.35216.1.S1_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34760Os.35216.2.S1_x_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34770OsAffx.12352.1.S1_at11/112+20843795..20845282Leucine Rich Repeat family protein
LOC_Os02g34780OsAffx.24577.1.S1_at11/112+20846984..20847190hypothetical protein
LOC_Os02g34790OsAffx.12351.2.S1_at11/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34790OsAffx.12352.1.S1_at1/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34800OsAffx.12353.1.S1_at11/112+20858661..20859470Leucine Rich Repeat family protein
LOC_Os02g34810Os.26815.1.S1_at11/112+20862392..20866211L-ascorbate peroxidase 8, chloroplast precursor, putative, expressed
LOC_Os02g34820NANA2+20867867..20868103hypothetical protein
LOC_Os02g34830NANA2+20872114..20876938TPR Domain containing protein, expressed
LOC_Os02g34840Os.11100.1.S1_at11/112+20878409..20880621RNA polymerase II transcriptional coactivator KIWI, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12353.1.S1_at--500--391Chr02:20859215..20859239 (25 bp)
ATCACCAAGATCACTCTGCACGGAG
LOC_Os02g34800
OsAffx.12353.1.S1_at--587--10451Chr02:20859184..20859208 (25 bp)
TTAGAGGCTCACTGGAGGCCCTCAA
LOC_Os02g34800
OsAffx.12353.1.S1_at--157--8971Chr02:20859139..20859163 (25 bp)
TGACAAGCATCAACCTTTCACACAA
LOC_Os02g34800
OsAffx.12353.1.S1_at--773--3291Chr02:20859121..20859145 (25 bp)
CACACAACAGGCTTACAGGGATGAT
LOC_Os02g34800
OsAffx.12353.1.S1_at--858--7651Chr02:20859104..20859128 (25 bp)
GGGATGATCCCTCAGAGTATCATGT
LOC_Os02g34800
OsAffx.12353.1.S1_at--300--1371Chr02:20859072..20859096 (25 bp)
AGAGCTCAGAGCCTTGATCCTGCAC
LOC_Os02g34800
OsAffx.12353.1.S1_at--211--8691Chr02:20858919..20858943 (25 bp)
TGTGAGCCTAAACTTGTCAAGCAAT
LOC_Os02g34800
OsAffx.12353.1.S1_at--286--2571Chr02:20858893..20858917 (25 bp)
AACTGGGTGGTCATATACCTTCTGA
LOC_Os02g34800
OsAffx.12353.1.S1_at--691--10231Chr02:20858817..20858841 (25 bp)
TATTGGTCGTCTAGACAGCTTGTTC
LOC_Os02g34800
OsAffx.12353.1.S1_at--26--6811Chr02:20858738..20858762 (25 bp)
GTTTTAGCACTATCCAGTAACCAAT
LOC_Os02g34800
OsAffx.12353.1.S1_at--1013--3131Chr02:20858716..20858740 (25 bp)
AATTAACTGGTCCAATTCCCCATGA
LOC_Os02g34800
Target Sequence 
ATCACCAAGATCACTCTGCACGGAGTGAGGCTTAGAGGCTCACTGGAGGCCCTCAACTTCTCGGCCCTGACGACCCTGAC
AAGCATCAACCTTTCACACAACAGGCTTACAGGGATGATCCCTCAGAGTATCATGTCTCTCAAAGAGCTCAGAGCCTTGA
TCCTGCACAAAAATCAGATAAGGGGCTCCTTATTCCAACTAGGTTTAACATCTTTAACAAAGCTGAGGTTCTTAGTGCTA
AGCAATAATTTTCTTTCGAGTTCAATACCAAAGGAAATATGTAGTCTAAAAAGGCTTGTGAGCCTAAACTTGTCAAGCAA
TCAACTGGGTGGTCATATACCTTCTGAAATTGGGTTCCTCAGTAAGTTGATTAGATTGGATTTGTCCAACAACAACATTA
TTGGTCGTCTAGACAGCTTGTTCATGACAAACAAGCCAGGTAAATATAACAATAAATCATCTTTGTCAAATCTAAAGGTT
TTAGCACTATCCAGTAACCAATTAACTGGTCCAATTCCCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis