Browse Element(s) Details


OsAffx.12351.2.S1_at

Description tigr:9630.m03316
TID=OsAffx.12351.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=leucine-rich receptor protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3479011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34730NANA2+20826945..20829550transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g34740NANA2+20830524..20832383retrotransposon protein, putative, unclassified
LOC_Os02g34750OsAffx.12351.1.S1_at11/112+20836531..20840346Protein kinase domain containing protein, expressed
LOC_Os02g34760Os.35216.1.S1_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34760Os.35216.2.S1_x_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34770OsAffx.12352.1.S1_at11/112+20843795..20845282Leucine Rich Repeat family protein
LOC_Os02g34780OsAffx.24577.1.S1_at11/112+20846984..20847190hypothetical protein
LOC_Os02g34790OsAffx.12351.2.S1_at11/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34790OsAffx.12352.1.S1_at1/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34800OsAffx.12353.1.S1_at11/112+20858661..20859470Leucine Rich Repeat family protein
LOC_Os02g34810Os.26815.1.S1_at11/112+20862392..20866211L-ascorbate peroxidase 8, chloroplast precursor, putative, expressed
LOC_Os02g34820NANA2+20867867..20868103hypothetical protein
LOC_Os02g34830NANA2+20872114..20876938TPR Domain containing protein, expressed
LOC_Os02g34840Os.11100.1.S1_at11/112+20878409..20880621RNA polymerase II transcriptional coactivator KIWI, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12351.2.S1_at--1089--5831Chr02:20852118..20852140 (23 bp)
GACCAAAGGTTACCTTGCCCCAGAG
LOC_Os02g34790
OsAffx.12351.2.S1_at--384--9171Chr02:20851864..20852125 (25 bp)
TGCCCCAGAGCTTGCATACACAACA
LOC_Os02g34790
OsAffx.12351.2.S1_at--898--291Chr02:20851814..20851838 (25 bp)
ATAGCTTCGGAGTGCTTGTCTTTGA
LOC_Os02g34790
OsAffx.12351.2.S1_at--796--551Chr02:20851772..20851796 (25 bp)
ATCCTGGTGATTTCCTTTTGTCCTT
LOC_Os02g34790
OsAffx.12351.2.S1_at--285--7931Chr02:20851717..20851741 (25 bp)
GGATTTGTTGGACGCCCGGATCCCA
LOC_Os02g34790
OsAffx.12351.2.S1_at--345--6351Chr02:20851699..20851723 (25 bp)
GATCCCACTTCCTAAAGCTGAGACA
LOC_Os02g34790
OsAffx.12351.2.S1_at--742--10331Chr02:20851662..20851686 (25 bp)
TTTAGAGTGATCATGGCTGCTGTCC
LOC_Os02g34790
OsAffx.12351.2.S1_at--945--371Chr02:20851618..20851642 (25 bp)
ATCACGTCGTCCAACAATGCAACAT
LOC_Os02g34790
OsAffx.12351.2.S1_at--757--7051Chr02:20851593..20851617 (25 bp)
GTAACTCGGATGTTTTCTACAGCTG
LOC_Os02g34790
OsAffx.12351.2.S1_at--146--9871Chr02:20851576..20851600 (25 bp)
TACAGCTGAAGGACCTAGCAATCCT
LOC_Os02g34790
OsAffx.12351.2.S1_at--404--10011Chr02:20851561..20851585 (25 bp)
TAGCAATCCTGACCATCTACATGTT
LOC_Os02g34790
Target Sequence 
GACCAAAGGTTACCTTGCCCCAGAGCTTGCATACACAACAAGGGTGACAGAGAAATGCGATGTTTATAGCTTCGGAGTGC
TTGTCTTTGAGCTGTTCATGGGGCATCATCCTGGTGATTTCCTTTTGTCCTTCTCCATGGCCAAGGAAAGTACAACATTG
AAGGATTTGTTGGACGCCCGGATCCCACTTCCTAAAGCTGAGACAGCAAGTGAAATATTTAGAGTGATCATGGCTGCTGT
CCAGTGCTTGGACCCCAACCCATCACGTCGTCCAACAATGCAACATGTAACTCGGATGTTTTCTACAGCTGAAGGACCTA
GCAATCCTGACCATCTACATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12351.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis