Browse Element(s) Details


Os.11120.1.S1_at

Description gb:AY323478.1
DB_XREF= gi:33087060
GEN=cap2
TID=Os.11120.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11120 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds.
PROD=ap2 domain containing protein
FL= gb:AK073133.1 gb:AY323478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0846011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11120.1.S1_at--302--3851Chr03:4323362..4323386 (25 bp)
CTGCAGCTGCAGTATGCGGCGATGA
LOC_Os03g08460
Os.11120.1.S1_at--942--711Chr03:4323341..4323365 (25 bp)
ATGATCGCCGAATGCGACCGCGAGA
LOC_Os03g08460
Os.11120.1.S1_at--336--9371Chr03:4323220..4323244 (25 bp)
TCGACTGACGATCTTGCTGAACTGA
LOC_Os03g08460
Os.11120.1.S1_at--492--5331Chr03:4323172..4323196 (25 bp)
GAAGTCTGAACTCTGCACTATGCCA
LOC_Os03g08460
Os.11120.1.S1_at--239--3311Chr03:4323157..4323181 (25 bp)
CACTATGCCATATGGTGTTTCACCT
LOC_Os03g08460
Os.11120.1.S1_at--1021--8771Chr03:4323142..4323166 (25 bp)
TGTTTCACCTTCACTGTGAGGCTGA
LOC_Os03g08460
Os.11120.1.S1_at--1143--771Chr03:4323116..4323140 (25 bp)
ATGTGGGCCAGACGTCCGTTTGCCT
LOC_Os03g08460
Os.11120.1.S1_at--314--4451Chr03:4323095..4323119 (25 bp)
GCCTTGCTTGCTTTTGAGCTGCAAC
LOC_Os03g08460
Os.11120.1.S1_at--1120--9011Chr03:4323076..4323100 (25 bp)
TGCAACTGGGCGTTGTGCTGCAAGC
LOC_Os03g08460
Os.11120.1.S1_at--317--5171Chr03:4323057..4323081 (25 bp)
GCAAGCCTGCAAAGTGCCTGTGTAA
LOC_Os03g08460
Os.11120.1.S1_at--602--6431Chr03:4323010..4323034 (25 bp)
GATCTTGTATCCTTGTGACTTTGCA
LOC_Os03g08460
Target Sequence 
CTGCAGCTGCAGTATGCGGCGATGATCGCCGAATGCGACCGCGAGATGGAGGAGATCGCCGCCGTGGAGAGGGACCTCGA
GAGGCGCAGGAGGCAGGTGTTCGAGCGCAGAGGCCACCTGGTCAGGCAGGCCTCTCTTCTGCTCGACTGACGATCTTGCT
GAACTGAACTCTGAATGTTTGAGCTTGTCTGAAGTCTGAACTCTGCACTATGCCATATGGTGTTTCACCTTCACTGTGAG
GCTGACATGTGGGCCAGACGTCCGTTTGCCTTGCTTGCTTTTGAGCTGCAACTGGGCGTTGTGCTGCAAGCCTGCAAAGT
GCCTGTGTAAAGTTTGTGGGATTGTGTGTGTGGATCTTGTATCCTTGTGACTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis