Browse Element(s) Details


Os.11176.1.S1_at

Description gb:AK100921.1
DB_XREF= gi:32986130
TID=Os.11176.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133N20, full insert sequence.
FL= gb:AK100921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5740011/112-phosphoglycerate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
LOC_Os02g57380Os.54214.1.S1_at11/112+35153098..35155675Thioredoxin-like 8, chloroplast precursor, putative, expressed
LOC_Os02g57390Os.5424.1.S1_at11/112+35157621..35162467Pumilio/Mpt5 family RNA-binding protein, putative, expressed
LOC_Os02g57400Os.11176.1.S1_at11/112+35164546..351693852-phosphoglycerate kinase, putative, expressed
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11176.1.S1_at--543--711Chr02:35165279..35165303 (25 bp)
ATGATCCTCCTGATGCTGGAACTGA
LOC_Os02g57400
Os.11176.1.S1_at--441--3491Chr02:35164996..35165020 (25 bp)
CAGGCTCTGTTGATGAACACTCCAC
LOC_Os02g57400
Os.11176.1.S1_at--727--8191Chr02:35164959..35164983 (25 bp)
GGAATACGACGATCTGGCAATGCAG
LOC_Os02g57400
Os.11176.1.S1_at--357--8951Chr02:35164803..35164827 (25 bp)
TGACAGGTTTCACCACAATCTGGCC
LOC_Os02g57400
Os.11176.1.S1_at--1036--1291Chr02:35164768..35164792 (25 bp)
AGATGTCCAAGAAAGTAGCCGCCAC
LOC_Os02g57400
Os.11176.1.S1_at--1029--1431Chr02:35164743..35164767 (25 bp)
AGAACTGCCGTGTGCATAGTGCCTC
LOC_Os02g57400
Os.11176.1.S1_at--212--291Chr02:35164728..35164752 (25 bp)
ATAGTGCCTCCGGTGTCAAAGCAAC
LOC_Os02g57400
Os.11176.1.S1_at--291--1971Chr02:35164705..35164729 (25 bp)
ACTGTTGTTGGTCCAGATGTGCTCT
LOC_Os02g57400
Os.11176.1.S1_at--476--6271Chr02:35164690..35164714 (25 bp)
GATGTGCTCTGAACTCGGTTGTTAT
LOC_Os02g57400
Os.11176.1.S1_at--849--6291Chr02:35164658..35164682 (25 bp)
GATGAGCTTACCTCCATGACTGTAA
LOC_Os02g57400
Os.11176.1.S1_at--149--7071Chr02:35164631..35164655 (25 bp)
GTAAGAGAGGATCTGCTGCTTGTCT
LOC_Os02g57400
Target Sequence 
ATGATCCTCCTGATGCTGGAACTGACGAAGACCTAACTGATGAAGAAAGAGATATGCACGAGATAGAAGCAGGCTCTGTT
GATGAACACTCCACCAAGTCCGACGAGGAATACGACGATCTGGCAATGCAGGATGTGATGGAGAACGGTTACTGGTCCGA
CGACGAACAGGCTGCAAGCAGCACCAAGAACTCATCGAACCAGGAGAAGAACATCCATGGAGCAGCTGATGGTGATGTTG
TTGATGATGAAGGCAGTGGCAATGACAGGTTTCACCACAATCTGGCCTTCTTCCTGAAGATGTCCAAGAAAGTAGCCGCC
ACAGAACTGCCGTGTGCATAGTGCCTCCGGTGTCAAAGCAACTGTTGTTGGTCCAGATGTGCTCTGAACTCGGTTGTTAT
GTATCCTGATGAGCTTACCTCCATGACTGTAACTGTAAGAGAGGATCTGCTGCTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis