Browse Element(s) Details


Os.11183.1.S1_s_at

Description gb:AK068504.1
DB_XREF= gi:32978522
TID=Os.11183.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151H24, full insert sequence.
FL= gb:AK068504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1800010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17970Os.50906.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17970Os.52342.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17980OsAffx.27691.1.S1_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17980OsAffx.27691.1.S1_x_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17990OsAffx.15480.1.S1_at11/116+10461587..10461963hypothetical protein
LOC_Os06g18000Os.11183.1.S1_at10/116+10468305..10470226Protein kinase domain containing protein, expressed
LOC_Os06g18000Os.11183.1.S1_s_at10/116+10468305..10470226Protein kinase domain containing protein, expressed
LOC_Os06g18010Os.53164.1.S1_at11/116+10478286..10479903Flavonol 3-O-glucosyltransferase 5, putative, expressed
LOC_Os06g18020NANA6+10487449..10488915hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11183.1.S1_s_at--798--4571Chr06:10468773..10468797 (25 bp)
GCGCGGGCCACGACGAGCAGATCCT
LOC_Os06g18000
Os.11183.1.S1_s_at--906--9491Chr06:10468668..10468692 (25 bp)
TCTCCCAGATCAAGAACTAGCAAGC
LOC_Os06g18000
Os.11183.1.S1_s_at--201--10091Chr06:10468595..10468619 (25 bp)
TAGGCAGCAAGCGTGTCCACGGATT
LOC_Os06g18000
Os.11183.1.S1_s_at--166--10431Chr06:10468545..10468569 (25 bp)
TTAGTGCTGGACTTGTTGGGTCGTC
LOC_Os06g18000
Os.11183.1.S1_s_at--200--10831Chr06:10468530..10468554 (25 bp)
TTGGGTCGTCGTCGATCAGGTCAAA
LOC_Os06g18000
Os.11183.1.S1_s_at--68--4551Chr06:10468495..10468519 (25 bp)
GCCCAGTTGATAGGGACCGTGGCAC
LOC_Os06g18000
Os.11183.1.S1_s_at--594--8091Chr06:10468482..10468506 (25 bp)
GGACCGTGGCACAATTATTTATAGC
LOC_Os06g18000
Os.11183.1.S1_s_at--66--8231Chr06:10468475..10468499 (25 bp)
GGCACAATTATTTATAGCGGGAAAG
LOC_Os06g18000
Os.11183.1.S1_s_at--160--7331Chr06:10468430..10468454 (25 bp)
GTGCTTGCCGTGTTTACACAAGTGC
LOC_Os06g18000
Os.11183.1.S1_s_at--1086--4531Chr06:10468404..10468428 (25 bp)
GCGCTTGTTAATTAAGTGAACAGTA
LOC_Os06g18000
Os.11183.1.S1_s_at--37--10131Chr06:10468302..10468326 (25 bp)
TATGATTATCTTGACTTATTCCAAA
NONE
Target Sequence 
GCGCGGGCCACGACGAGCAGATCCTCCTCGTCCTCCGCATCGCCGTGTTNTGCACCGCCGACGACCCCAAGGACCGCCCC
NCCGCCAAGGACGTCCGCTGCATGNTCTCCCAGATCAAGAACTAGCAAGCAAATTGCTCGTGCTTCGCGTGCGCGAGGCG
TCGTGAATTCTGCCGTGTTAGGCAGCAAGCGTGTCCACGGATTCCTCAGTGTGGAATACTGGTAGTGCTTAGTGCTGGAC
TTGTTGGGTCGTCGTCGATCAGGTCAAAGGTGGGTGGGGCCCAGTTGATAGGGACCGTGGCACAATTATTTATAGCGGGA
AAGGGAAGTCAGTGAACGACGCTGTGCTTGCCGTGTTTACACAAGTGCTGCGCTTGTTAATTAAGTGAACAGTATATACA
CAGGAGGATTAGACTAATGAATGTGTTTGGTAGGTTAATTTATGAATGGATGGTGTGTTGTCTTTTGGTAATATGATTAT
CTTGACTTATTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11183.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis