Browse Element(s) Details


Os.11186.1.S1_at

Description gb:AK070827.1
DB_XREF= gi:32980850
TID=Os.11186.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064N24, full insert sequence.
FL= gb:AK070827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1062011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein
LOC_Os03g10610Os.11595.1.S2_at2/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.13325.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_x_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10620Os.11186.1.S1_at11/113+5401321..5405247hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g10630OsAffx.12810.1.S1_at9/113+5410221..5411099hypothetical protein
LOC_Os03g10640Os.50449.1.S1_at11/113+5413028..5419439Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g10650Os.11708.1.S1_at11/113+5420861..5423342Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g10660NANA3+5426394..5426609hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11186.1.S1_at--1141--9351Chr03:5402477..5402501 (25 bp)
TCGAGTTCCTCCAGACCGAGGGTCA
LOC_Os03g10620
Os.11186.1.S1_at--725--3931Chr03:5402666..5402690 (25 bp)
CGGCTACGGTACGTGTGGCCCAGTA
LOC_Os03g10620
Os.11186.1.S1_at--1005--5631Chr03:5402695..5402719 (25 bp)
GACACGCATCCCTCTACTGTTTTTT
LOC_Os03g10620
Os.11186.1.S1_at--568--10451Chr03:5402725..5402749 (25 bp)
TTACCGCGTCGGATTTTACTGCATT
LOC_Os03g10620
Os.11186.1.S1_at--6--6551Chr03:5402736..5402760 (25 bp)
GATTTTACTGCATTTTTACCCTCCT
LOC_Os03g10620
Os.11186.1.S1_at--512--3811Chr03:5402756..5402780 (25 bp)
CTCCTCTTCTCAGGCCTAGAAAATA
LOC_Os03g10620
Os.11186.1.S1_at--323--10012Chr06:25518998..25519017 (20 bp)
TAGAAAATATTTCGGCGCGACCTGC
NONE
Os.11186.1.S1_at--302--4611Chr03:5402788..5402812 (25 bp)
GCGACCTGCCAAGACCGAGAGTGTA
LOC_Os03g10620
Os.11186.1.S1_at--806--7431Chr03:5402808..5402832 (25 bp)
GTGTACTGTAGCATTAGTGCTCGAT
LOC_Os03g10620
Os.11186.1.S1_at--1084--6531Chr03:5402830..5402854 (25 bp)
GATTTTTACCTACCTTACTCTATTG
LOC_Os03g10620
Os.11186.1.S1_at--253--9891Chr03:5402865..5402889 (25 bp)
TACATTACTGGAGTGCTTCGTGCAT
LOC_Os03g10620
Target Sequence 
TCGAGTTCCTCCAGACCGAGGGTCACCTCCCCCACCTCAGCGCCCCCAGCCTCCTCGCCCAGGTGCTCCGCCGCGCTCTC
GCCCGGNNNTAATCCAACGCCCCCCNNACGCCACCGCGGNGCGCCGCNCGTGCGCNGTAGCCNGCAGCGACGAGTCAAAA
CGAAGGAGAAAAAAAAAAACCACCGCAGCTGCGGCTACGGTACGTGTGGCCCAGTAGGGGGACACGCATCCCTCTACTGT
TTTTTTTTTTTTTACCGCGTCGGATTTTACTGCATTTTTACCCTCCTCTTCTCAGGCCTAGAAAATATTTCGGCGCGACC
TGCCAAGACCGAGAGTGTACTGTAGCATTAGTGCTCGATTTTTACCTACCTTACTCTATTGGAAAAAAAATTACATTACT
GGAGTGCTTCGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis