Browse Element(s) Details


Os.11193.1.S1_at

Description gb:AK066760.1
DB_XREF= gi:32976778
TID=Os.11193.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-041-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075G04, full insert sequence.
FL= gb:AK066760.1 gb:AK104825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5524010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed
LOC_Os03g55220Os.51847.1.S1_x_at11/113+31360998..31365561Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55230Os.31504.1.S1_at11/113+31375286..31376903Cytochrome P450 81E1, putative, expressed
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11193.1.S1_at--424--551Chr03:31384645..31384669 (25 bp)
ATCCCCAAGGTCGTGCCGTTGGAGG
LOC_Os03g55240
Os.11193.1.S1_at--124--10571Chr03:31384703..31384727 (25 bp)
TTCTTCGCGAGCTCGTCTGAATATT
LOC_Os03g55240
Os.11193.1.S1_at--111--7171Chr03:31384717..31384741 (25 bp)
GTCTGAATATTTTTTGGCGGCGTTT
LOC_Os03g55240
Os.11193.1.S1_at--1093--10351Chr03:31384727..31384751 (25 bp)
TTTTTGGCGGCGTTTGCATCTCCAG
LOC_Os03g55240
Os.11193.1.S1_at--837--6951Chr03:31384785..31384809 (25 bp)
GTAGCAAATAAGCTTCTCGTGAGCA
LOC_Os03g55240
Os.11193.1.S1_at--959--1551Chr03:31384795..31384819 (25 bp)
AGCTTCTCGTGAGCATACACATAAC
LOC_Os03g55240
Os.11193.1.S1_at--169--10251Chr03:31384861..31384885 (25 bp)
TTTGGAAGAGAGTGACTGCGCTAGC
LOC_Os03g55240
Os.11193.1.S1_at--246--3831Chr03:31384876..31384900 (25 bp)
CTGCGCTAGCAATCGCTCTTTGAGA
LOC_Os03g55240
Os.11193.1.S1_at--753--2831Chr03:31384961..31384985 (25 bp)
AAGTATAATTGTACACGCCAGGTAT
LOC_Os03g55240
Os.11193.1.S1_at--708--2171Chr03:31384973..31384997 (25 bp)
ACACGCCAGGTATTTCAATTTCATA
LOC_Os03g55240
Os.11193.1.S1_at--391--9071Chr03:31384999..31385023 (25 bp)
TGCTTGTGTGATGTATGCGTTCGAA
NONE
Target Sequence 
ATCCCCAAGGTCGTGCCGTTGGAGGCCATGTGCAGGCCGCGCGACGCCATGGGTGGTGTTCTTCGCGAGCTCGTCTGAAT
ATTTTTTGGCGGCGTTTGCATCTCCAGGACGAACTCATGTANTGAAAGCNCCAAAAGTAAGTAGCAAATAAGCTTCTCGT
GAGCATACACATAACNCATGTGAGCTTGTAATGTGGAATAAATTACACGTAGAGGATTTGGAAGAGAGTGACTGCGCTAG
CAATCGCTCTTTGAGAGTTGTGTTTTNCAGTTTTAGTGAGGNACCAATTTGTATGAATGTGCAATAATCATGTATAAAGT
ATAATTGTACACGCCAGGTATTTCAATTTCATATTGCTTGTGTGATGTATGCGTTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis